User: A.Mubashir

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Posts by A.Mubashir

<prev • 6 results • page 1 of 1 • next >
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Comment: A: Which Genotype file format is it?
... Thank you so much for your quick response. However, i answered very late, and sorry for that. I read a lot of stuff and figure out that the genotype file that i have, doesnot follow any format. Actually, it is neither vcf nor any other format. I have converted it in hapmap, vcf and plink format. A ...
written 12 days ago by A.Mubashir 0
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Which Genotype file format is it?
... Chromosome Position RefBase AltBase MAF RefBaseNum AltBaseNum Sample 1 Sample2 Sample3 I am confused about this format. I have downloaded it from an online database. I looks like vcf format, but it is not supported by any software. ...
genome snp written 19 days ago by A.Mubashir 0
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Error in GWAS by GAPIT
... I am trying to do GWAS in GAPIT but it is showing the following error again and again. I have been trying to figure out this problem. Can anyone explain what is the reason behind it. Error in merge.data.frame(PWIP$PWIP, GI[, c("SNP", "effect")], by.x = "SNP", : negative length vectors are not ...
genome forum snp written 21 days ago by A.Mubashir 0
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Comment: C: Filtering already published SNP data
... Thanks for your kind response and suggestions. ...
written 27 days ago by A.Mubashir 0
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Filtering already published SNP data
... Hello, I want to do GWAS on 200 accessions of a plant. The SNP data has already been published and I just downloaded it from an online database. Since, the SNP data has already been processed by the person, who used it to conduct GWAS on a different trait and got it published in a well reputed ...
snp written 28 days ago by A.Mubashir 0
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Merging multiple HapMap SNP files.
... I have 26 separate SNP HapMap files. I want to merge all those files to create a single SNP file? how can do it? I am going to do genome wide association after merging all the SNP files.Thanks in advance ...
genome sequence snp sequencing written 7 weeks ago by A.Mubashir 0 • updated 7 weeks ago by Bastien Hervé4.7k

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