User: ors9

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ors90
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Posts by ors9

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Comment: C: efetch by UID list returns more UIDs than requested
... I tried both formats using the webservice (see the response above). Both retrieved over 2000 results (the grep searched for entries by `>`, I missed that). But you didn't set a complexity for your request, and it worked when I tried that (see the other answer). ...
written 6 weeks ago by ors90
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Answer: A: efetch by UID list returns more UIDs than requested
... After a bit more digging around according to @genomax's answer, I found that removing the `complexity` parameter in my requests narrows the response down to one result in the case of `AAF41719.1` and to the desired number of results in the case of the sample list. Thanks a bunch, genomax! ...
written 6 weeks ago by ors90
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Comment: C: efetch by UID list returns more UIDs than requested
... Sorry for the late reply, however it seems not to work in my case. After downloading NCBI's response this happens: `cat /tmp/mozilla_userX/sequence.fasta | grep | wc -l` returns 2064 results. ...
written 6 weeks ago by ors90
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Comment: C: efetch by UID list returns more UIDs than requested
... According to NCBI's [efetch page][1], `complexity=4` should return a `minimal pub-set`. While I'm not sure what that means, changing the complexity of a request for `AAF41719.1` only from 4 to 3 results in a larger response file (by about 10Mb) and includes additional info for each entry such as `GB ...
written 6 weeks ago by ors90
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efetch by UID list returns more UIDs than requested
... I'm trying to download and parse a large amount of peptide sequences from NCBI using the Entrez eutils. The requests are done using efetch, and spacified by a list of UIDs. My problem is that efetch returns more UIDs than those requested, sometimes many more. **For example** when requesting the fo ...
entrez eutils written 7 weeks ago by ors90

Latest awards to ors9

Scholar 6 weeks ago, created an answer that has been accepted. For A: efetch by UID list returns more UIDs than requested

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