User: Aynur

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Aynur40
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2 months, 2 weeks ago
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a**********@ku.edu.tr

Posts by Aynur

<prev • 44 results • page 2 of 5 • next >
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Comment: C: RNA-Seq data Quality Assessment- BoxPlot Interpretation
... Alright. I already had my FastQC, and STAR aligning. I was making these plots to see between sample distribution prior to DEG analysis with DESeq2. These plots are mentioned in tutorials, and I am not sure if it is needed or not. If this is not informing me of anything I should be aware of, then ...
written 8 weeks ago by Aynur40
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RNA-Seq data Quality Assessment- BoxPlot Interpretation
... Hello, Please help me with understanding my boxplot. Here is the boxplot, I got for my RNA-Seq data. ![Box Plot][1] My data is head(rawCountTable) con-1 con-2 a-1 a-2 b-1 b-2 c-1 c-2 d-1 d-2 ENSMUSG0000000000 0 0 0 0 ...
R forum alignment rna-seq sequencing written 8 weeks ago by Aynur40 • updated 8 weeks ago by rpolicastro1.9k
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Comment: C: For loop error for merging HTSeq counts
... Hello, Can you please open it now? Thanks. ...
written 9 weeks ago by Aynur40
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Comment: C: For loop error for merging HTSeq counts
... Sorry for the inconvenience. Thank you for pointing out. Let me try to make the post readable first. ...
written 9 weeks ago by Aynur40
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Comment: C: For loop error for merging HTSeq counts
... I just learned this HTSeq and made all files. Thats why. ...
written 9 weeks ago by Aynur40
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Comment: C: For loop error for merging HTSeq counts
... Thank you for pointing out the old website, but I can continue with DESeq2. My problem is about looping, even before using DESeq. Can you please help me with my for loop to merge HTSeq into one file, then I can continue with DESeq2. From other tutorials, I could not create the DESeq2 object, but t ...
written 9 weeks ago by Aynur40
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Comment: C: Merging HTseq files
... I am sorry; I did not know it is considered as hijacking the discussion. I thought as it is a related question, if we get a solution it might be of help to us. ...
written 9 weeks ago by Aynur40
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For loop error for merging HTSeq counts
... Hello, Please help me with the following code. I start with what I have done and where did I get wrong. I think there must be something wrong, so I am not getting my all HTSeq data merged into one. As a beginner, I followed [this tutorial](https://angus.readthedocs.io/en/2014/analyzing_drosophila ...
R rna-seq sequencing written 9 weeks ago by Aynur40 • updated 9 weeks ago by karl.stamm3.8k
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Comment: C: Merging HTseq files
... I used the following code on R library(tidyverse) counts_files_pattern = "\\.counts\\.txt$" counts_table <- list.files(pattern = counts_files_pattern) %>% #apply an import function to the listed files map(function(x) { print(x) read_table ...
written 10 weeks ago by Aynur40 • updated 9 weeks ago by h.mon31k
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Comment: C: Merging HTseq files
... Hello, Did you get this problem solved? I also want to merge HTSeq files. Thanks. ...
written 10 weeks ago by Aynur40

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