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Comment:
Comment: I can't add VAF from population for all of my variants from VCF file
16 days ago by
Jeremy Leipzig
22k
1
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1
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426
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Comment:
Comment: Snakemake rule that runs an assessment for once after completing other previous
22 days ago by
Jeremy Leipzig
22k
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426
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Comment:
Comment: Snakemake rule that runs an assessment for once after completing other previous
22 days ago by
Jeremy Leipzig
22k
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1.3k
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Comment:
Comment: Novel sparse optimisation for high accuracy cancer classification on the 33-canc
22 days ago by
Jeremy Leipzig
22k
0
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2
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426
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Comment:
Comment: Snakemake rule that runs an assessment for once after completing other previous
22 days ago by
Jeremy Leipzig
22k
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392
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Comment:
Comment: Snakemake: how to define output from a dictionary according to wildcard
26 days ago by
Jeremy Leipzig
22k
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0
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223
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Comment:
Comment: Resolution of ambiguous calls in germline vcf
26 days ago by
Jeremy Leipzig
22k
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730
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Comment:
Comment: What is the expected number of common/mutual/shared SNVs between two, three, fou
4 weeks ago by
Jeremy Leipzig
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730
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Comment:
Comment: What is the expected number of common/mutual/shared SNVs between two, three, fou
5 weeks ago by
Jeremy Leipzig
22k
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30k
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Comment:
Comment: List of cloud genomics companies
5 weeks ago by
Jeremy Leipzig
22k
1
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0
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24k
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Comment:
Comment: Difference between tSNE and PCA analysis
5 weeks ago by
Jeremy Leipzig
22k
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383
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Comment:
Comment: how to extract variants from the vcf.gz files linked below?
5 weeks ago by
Jeremy Leipzig
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30k
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Comment:
Comment: List of cloud genomics companies
5 weeks ago by
Jeremy Leipzig
22k
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30k
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Comment:
Comment: List of cloud genomics companies
5 weeks ago by
Jeremy Leipzig
22k
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277
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Comment:
Comment: Linear Mixed-Effects Model Coefficient Interpretation
6 weeks ago by
Jeremy Leipzig
22k
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572
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Comment:
Comment: difference betwween hail and plink
6 weeks ago by
Jeremy Leipzig
22k
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307
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Comment:
Comment: How to reference input variable in output section of rule of Snakemake rule
7 weeks ago by
Jeremy Leipzig
22k
0
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1
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390
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Comment:
Comment: 1000 Genome: Cause of duplicate variants with different genotypes
7 weeks ago by
Jeremy Leipzig
22k
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1
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390
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Comment:
Comment: 1000 Genome: Cause of duplicate variants with different genotypes
7 weeks ago by
Jeremy Leipzig
22k
0
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0
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482
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Comment:
Comment: What tools exist for filtering hundreds of VCFs (and annotated into VCFs in txt
8 weeks ago by
Jeremy Leipzig
22k
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0
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352
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Comment:
Comment: How quickly can an SRA submission proceed directly from S3
8 weeks ago by
Jeremy Leipzig
22k
0
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352
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Comment:
Comment: How quickly can an SRA submission proceed directly from S3
8 weeks ago by
Jeremy Leipzig
22k
0
votes
0
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733
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Comment:
Comment: Isolating and extracting regions in VCF file
9 weeks ago by
Jeremy Leipzig
22k
0
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1
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624
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Comment:
Comment: GIAB Benchmarking
10 weeks ago by
Jeremy Leipzig
22k
0
votes
0
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400
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Comment:
Comment: Tool to Create Sequence Logo Plot with Indels or Alignment-Aware Position Freque
11 weeks ago by
Jeremy Leipzig
22k
2
votes
2
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983
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Comment:
Comment: Problem with Mamba
3 months ago by
Jeremy Leipzig
22k
0
votes
0
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659
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Comment:
Comment: Multiallelic variants when merging VCF's with GLnexus
3 months ago by
Jeremy Leipzig
22k
0
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1
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659
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Comment:
Comment: Multiallelic variants when merging VCF's with GLnexus
3 months ago by
Jeremy Leipzig
22k
0
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0
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1.6k
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Comment:
Comment: How to query 1000 genomes project VCF files for specific regions without downloa
3 months ago by
Jeremy Leipzig
22k
0
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1
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659
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Comment:
Comment: Multiallelic variants when merging VCF's with GLnexus
3 months ago by
Jeremy Leipzig
22k
3
votes
0
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759
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Comment:
Comment: Individual vs. joint call VCFs
3 months ago by
Jeremy Leipzig
22k
0
votes
1
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759
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Comment:
Comment: Individual vs. joint call VCFs
3 months ago by
Jeremy Leipzig
22k
0
votes
0
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2.6k
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Comment:
Comment: How to display a VCF/BCF file or stream as a paginated table in a python web fra
3 months ago by
Jeremy Leipzig
22k
0
votes
0
replies
275
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Comment:
Comment: Bgen file not being opened by PRSice
4 months ago by
Jeremy Leipzig
22k
1
vote
1
reply
847
views
Comment:
Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
4 months ago by
Jeremy Leipzig
22k
0
votes
0
replies
835
views
Comment:
Comment: Isaac aligner V4 genome aligner questions
4 months ago by
Jeremy Leipzig
22k
1
vote
0
replies
432
views
Comment:
Comment: How to find the Allele Number (AN) of a variant not reported on gnomAD
4 months ago by
Jeremy Leipzig
22k
1
vote
1
reply
847
views
Comment:
Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
4 months ago by
Jeremy Leipzig
22k
1
vote
1
reply
847
views
Comment:
Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
4 months ago by
Jeremy Leipzig
22k
0
votes
1
reply
668
views
Comment:
Comment: Calculating ROC50 in R
4 months ago by
Jeremy Leipzig
22k
0
votes
1
reply
668
views
Comment:
Comment: Calculating ROC50 in R
4 months ago by
Jeremy Leipzig
22k
1
vote
1
reply
820
views
Comment:
Comment: N50 value of bacterial assembly is not half of total assembly size
5 months ago by
Jeremy Leipzig
22k
0
votes
1
reply
599
views
Comment:
Comment: Confirming called variants
5 months ago by
Jeremy Leipzig
22k
1
vote
0
replies
847
views
Comment:
Comment: Wildcards in Snakemake
5 months ago by
Jeremy Leipzig
22k
2
votes
1
reply
847
views
Comment:
Comment: Wildcards in Snakemake
5 months ago by
Jeremy Leipzig
22k
0
votes
0
replies
591
views
Comment:
Comment: Allele numbers and frequencies in X and Y chr?
5 months ago by
Jeremy Leipzig
22k
0
votes
1
reply
591
views
Comment:
Comment: Allele numbers and frequencies in X and Y chr?
5 months ago by
Jeremy Leipzig
22k
0
votes
1
reply
879
views
Comment:
Comment: How long should the AAA... sequence be at the end of read, so that fastqc and mu
5 months ago by
Jeremy Leipzig
22k
0
votes
0
replies
1.2k
views
Comment:
Comment: Weirdness in annotation (missing allele frequencies)
5 months ago by
Jeremy Leipzig
22k
1
vote
0
replies
765
views
Comment:
Comment: Frustrated with DEA results
6 months ago by
Jeremy Leipzig
22k
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