User: noon

gravatar for noon
noon0
Reputation:
0
Status:
New User
Last seen:
21 hours ago
Joined:
1 month, 2 weeks ago
Email:
n*******@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by noon

<prev • 4 results • page 1 of 1 • next >
0
votes
1
answer
134
views
1
answers
Comment: C: viewing MAF files as dataframe of size over 2GB
... Thank you that was the problem! Sorry I'm new to using maftools so I was going off the documentation tutorial. Thank you for your time! ...
written 6 weeks ago by noon0
0
votes
1
answer
134
views
1
answers
Comment: C: viewing MAF files of size over 2GB
... Yes this works so I can view it! The problem is I need to manipulate it as if it were a dataframe so I can apply certain thresholds to the data and select for specific columns. ...
written 6 weeks ago by noon0
0
votes
1
answer
134
views
1
answers
Comment: C: viewing MAF files of size over 2GB
... This is what I have: funcotation = system.file('extdata', '/Users/Downloads/funcotated.maf', package='maftools') readfunc=read.maf(maf=funcotation) when I use dput(maf) I get this: "" ...
written 6 weeks ago by noon0
5
votes
1
answer
134
views
1
answer
viewing MAF files as dataframe of size over 2GB
... I used GATK's Funcotator to annotate a VCF file I have and it produced a MAF file just over 2GB in size. I've tried using pandas in Python and maftools in R and it hasn't worked. Specifically the file size seems to be too large to be opened in R throwing this error Error in data.table::fread( ...
maf R python annotations gatk written 6 weeks ago by noon0

Latest awards to noon

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 616 users visited in the last hour