Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
2
replies
403
views
Merge Seurat objects
seurat merge single-cell
updated 3 months ago by 45k • written 3 months ago by ▴ 110
0
votes
1
reply
482
views
How do I use msigdb to annotate the single cell data?
msigdb single-cell
updated 10 months ago by 45k • written 10 months ago by ▴ 110
0
votes
0
replies
630
views
Comment: Comment: single nucleus RNA seq processing pipeline questions
10 months ago by biotrekker ▴ 110
2
votes
1
reply
465
views
I am getting an error with Kallisto Bustools wrapper (kb) command to create an index
kb kallisto bustools
updated 10 months ago by ★ 7.5k • written 10 months ago by ▴ 110
0
votes
0
replies
717
views
Comment: Comment: Is the 10X multiome chemistry most similar similar to 10XV1, 10XV2, or 10XV3?
10 months ago by biotrekker ▴ 110
2
votes
2
replies
717
views
Is the 10X multiome chemistry most similar similar to 10XV1, 10XV2, or 10XV3?
snRNAseq kallisto 10X
10 months ago by biotrekker ▴ 110
1
vote
2
replies
630
views
single nucleus RNA seq processing pipeline questions
demultiplexing snRNAseq
10 months ago by biotrekker ▴ 110
0
votes
1
reply
732
views
Comment: Comment: Can I go from kallisto results to SEURAT directly
11 months ago by biotrekker ▴ 110
1
vote
3
replies
732
views
Can I go from kallisto results to SEURAT directly
cell bustoolls kallisto single
updated 11 months ago by ★ 7.5k • written 11 months ago by ▴ 110
0
votes
1
reply
393
views
How do I run fastq-dump on multiple prefetched files at once?
sratoolkit fastq-dump
updated 13 months ago by 166k • written 13 months ago by ▴ 110
2
votes
4
replies
887
views
How to I use prefetch (SRAtoolkit) on multiple accessions all at one?
sratoolkit prefetch
updated 13 months ago by 166k • written 13 months ago by ▴ 110
0
votes
1
reply
873
views
Comment: Comment: Is there a reason why fastq files from SRAExplorer and SRAToolkit are different
14 months ago by biotrekker ▴ 110
0
votes
1
reply
873
views
Comment: Comment: Is there a reason why fastq files from SRAExplorer and SRAToolkit are different
14 months ago by biotrekker ▴ 110
1
vote
5
replies
873
views
Is there a reason why fastq files from SRAExplorer and SRAToolkit are different sizes?
sraexplorer sratoolkit
updated 14 months ago by 151k • written 14 months ago by ▴ 110
0
votes
0
replies
1.6k
views
Comment: Comment: How do I use md5sum to check if my .fastq files from SRA Explorer have been down
14 months ago by biotrekker ▴ 110
0
votes
2
replies
1.6k
views
Comment: Comment: How do I use md5sum to check if my .fastq files from SRA Explorer have been down
14 months ago by biotrekker ▴ 110
2
votes
7
replies
1.6k
views
How do I use md5sum to check if my .fastq files from SRA Explorer have been downloaded correctly
scRNA-seq md5
updated 3 months ago by 88k • written 15 months ago by ▴ 110
0
votes
0
replies
1.5k
views
Comment: Comment: Error with fastq file corruption when downloading from SRA explorer using SLURM
16 months ago by biotrekker ▴ 110
2
votes
6
replies
1.5k
views
Error with fastq file corruption when downloading from SRA explorer using SLURM job
SRAExplorer corruption rna-seq SLURM
16 months ago by biotrekker ▴ 110
4
votes
4
replies
1.3k
views
How to combine different "groups" in DESeq2 constrast
rnaseq DESeq2
updated 2.2 years ago by 14k • written 2.2 years ago by ▴ 110
0
votes
1
reply
1.3k
views
Comment: Comment: How to combine different "groups" in DESeq2 constrast
2.2 years ago by biotrekker ▴ 110
7
votes
1
reply
1.7k
views
How to use filterbyExpr with DESeq2?
DESeq2 RNA-seq edgeR
updated 2.2 years ago by 45k • written 2.2 years ago by ▴ 110
5
votes
2
replies
1.9k
views
How do I go from TPM to PCA (rna-seq)?
pca rnaseq tpm
updated 2.3 years ago by 88k • written 2.3 years ago by ▴ 110
0
votes
1
reply
623
views
How do I use tximport to annotate using ensemble annotation on GRCh37.75?
tximport ensemble annotation
updated 2.3 years ago by 88k • written 2.3 years ago by ▴ 110
0
votes
1
reply
1.1k
views
What is the best way to process a metadata file that SEURAT can read?
metadata scRNAseq seurat
updated 2.7 years ago by ★ 1.7k • written 2.7 years ago by ▴ 110
1
vote
1
reply
3.7k
views
Comment: Comment: Analyzing single cell RNA seq with multiple samples and conditions
2.7 years ago by biotrekker ▴ 110
12
votes
3
replies
3.7k
views
Analyzing single cell RNA seq with multiple samples and conditions
cell merge single seurat scRNAseq
2.7 years ago by biotrekker ▴ 110
1
vote
1
reply
1.5k
views
Need some help with next steps after getting fGSEA results from Microarray data.
microarray differential expression analysis fGSEA
updated 3.8 years ago by ▴ 20 • written 4.6 years ago by ▴ 110
47
votes
24
replies
6.2k
views
13 follow
Forum: What programming language do you use the most in your work? Which one do you like the best?
Programming Python R Scripting
updated 2.2 years ago by 45k • written 4.3 years ago by ▴ 110
0
votes
0
replies
853
views
I am having trouble running tmodhg with ECC library?
tmodhg microarray analysis
updated 4.5 years ago by 21k • written 4.5 years ago by ▴ 110
1
vote
2
replies
1.2k
views
I am having trouble downloading msigdb_v7.2.xml
msigdb
updated 4.5 years ago by 151k • written 4.5 years ago by ▴ 110
0
votes
0
replies
1.2k
views
Comment: C: I am having trouble downloading msigdb_v7.2.xml
4.5 years ago by biotrekker ▴ 110
4
votes
23
replies
4.1k
views
Getting error when using lmfit (LIMMA) for Microarray data analysis
R Microarray LIMMA
4.7 years ago by biotrekker ▴ 110
1
vote
1
reply
4.1k
views
Answer: A: Getting error when using lmfit (LIMMA) for Microarray data analysis
4.7 years ago by biotrekker ▴ 110
0
votes
1
reply
4.1k
views
Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
updated 4.7 years ago by 88k • written 4.7 years ago by ▴ 110
0
votes
2
replies
4.1k
views
Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
4.7 years ago by biotrekker ▴ 110
0
votes
1
reply
4.1k
views
Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
4.7 years ago by biotrekker ▴ 110
0
votes
1
reply
4.1k
views
Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
4.7 years ago by biotrekker ▴ 110
0
votes
1
reply
4.1k
views
Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
updated 4.7 years ago by 89k • written 4.7 years ago by ▴ 110
0
votes
1
reply
4.1k
views
Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
updated 4.7 years ago by 89k • written 4.7 years ago by ▴ 110
0
votes
1
reply
4.1k
views
Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
updated 4.7 years ago by 89k • written 4.7 years ago by ▴ 110
0
votes
1
reply
4.1k
views
Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
4.7 years ago by biotrekker ▴ 110
0
votes
1
reply
4.1k
views
Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
updated 4.7 years ago by 89k • written 4.7 years ago by ▴ 110
0
votes
1
reply
2.4k
views
Comment: C: Cannot get read.celfiles() method to work?
4.8 years ago by biotrekker ▴ 110
1
vote
3
replies
2.4k
views
Cannot get read.celfiles() method to work?
R Micoroarray Omics oligo ff
updated 4.0 years ago by 89k • written 4.8 years ago by ▴ 110
45 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6