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Comment: Comment: best pipeline/practice for analyzing WES for germline and somatic variant callin
12 months ago by epigene ▴ 590
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912
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Comment: Comment: best pipeline/practice for analyzing WES for germline and somatic variant callin
12 months ago by epigene ▴ 590
0
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1
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912
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Comment: Comment: best pipeline/practice for analyzing WES for germline and somatic variant callin
12 months ago by epigene ▴ 590
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1
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820
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Comment: Comment: Annotate variants for cancer genomics studies
2.8 years ago by epigene ▴ 590
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12k
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Comment: C: Get Snp Position From A Python Interface.
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 590
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0
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3.9k
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Comment: C: How To Generate Random Size Matched Background Regions
updated 4.4 years ago by 43k • written 8.7 years ago by ▴ 590
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0
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283k
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Comment: C: How To Filter Mapped Reads With Samtools
updated 5.7 years ago by 43k • written 7.6 years ago by ▴ 590
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22k
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Comment: C: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
7.1 years ago by epigene ▴ 590
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1
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15k
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Comment: C: Subsample BAM to fixed number of alignments
7.3 years ago by epigene ▴ 590
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0
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2.3k
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Comment: C: how do aligners determine which reads to apply duplicate reads flag (1024)?
7.5 years ago by epigene ▴ 590
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1
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2.3k
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Comment: C: how do aligners determine which reads to apply duplicate reads flag (1024)?
7.5 years ago by epigene ▴ 590
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2.1k
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Comment: C: PE read flag 69 and 137 meaning
7.6 years ago by epigene ▴ 590
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2.4k
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Comment: C: Where to download earlier versions of GWAS Catalog?
7.6 years ago by epigene ▴ 590
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0
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8.1k
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Comment: C: SAM flag and select reads that map uniquely
7.7 years ago by epigene ▴ 590
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1
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34k
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Comment: C: Samtools View: Only Forward Or Reverse Strand
7.7 years ago by epigene ▴ 590
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1
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34k
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Comment: C: SAM FLAG for primary alignments, secondary alignments and what's their relations
7.7 years ago by epigene ▴ 590
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0
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9.3k
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Comment: C: Why The Properly Paired Results From Bwa Mem Is An Odd Number
7.7 years ago by epigene ▴ 590
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1
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8.1k
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Comment: C: SAM flag and select reads that map uniquely
7.7 years ago by epigene ▴ 590
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0
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6.3k
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Comment: C: Single-end strand specific Rna-Seq: how to separate alignments by strand
7.7 years ago by epigene ▴ 590
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0
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8.1k
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Comment: C: SAM flag and select reads that map uniquely
7.7 years ago by epigene ▴ 590
0
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1
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6.3k
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Comment: C: Single-end strand specific Rna-Seq: how to separate alignments by strand
7.7 years ago by epigene ▴ 590
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1
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8.3k
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Comment: C: UCSC hg19 gtf (genePredToGtf OS incompatibility)
7.7 years ago by epigene ▴ 590
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0
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37k
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Comment: C: In Sam Format, Clarify The Meaning Of The "0" Flag.
7.7 years ago by epigene ▴ 590
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1
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37k
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Comment: C: In Sam Format, Clarify The Meaning Of The "0" Flag.
7.7 years ago by epigene ▴ 590
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1
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34k
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Comment: C: SAM FLAG for primary alignments, secondary alignments and what's their relations
7.7 years ago by epigene ▴ 590
0
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1
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8.3k
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Comment: C: UCSC hg19 gtf (genePredToGtf OS incompatibility)
7.7 years ago by epigene ▴ 590
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0
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1.9k
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Comment: C: Is there a tools to select alignment from BAM files with particular tag value?
7.7 years ago by epigene ▴ 590
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0
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27k
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Comment: C: What Does Cds And Exon Mean In A Gtf File?
7.7 years ago by epigene ▴ 590
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2
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6.1k
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Comment: C: Which source of annotation files to use, Ensembl or UCSC?
7.7 years ago by epigene ▴ 590
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1
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19k
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Comment: C: HISAT2 command help
7.7 years ago by epigene ▴ 590
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1
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19k
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Comment: C: HISAT2 command help
7.7 years ago by epigene ▴ 590
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2.3k
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Comment: C: how to set reporting options for RNA-seq reads alignment with hisat2?
7.7 years ago by epigene ▴ 590
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0
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3.6k
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Comment: C: GTAK VariantsToTable only generates header?
7.8 years ago by epigene ▴ 590
0
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1
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3.6k
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Comment: C: GTAK VariantsToTable only generates header?
7.8 years ago by epigene ▴ 590
0
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1
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8.1k
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Comment: C: SAM flag and select reads that map uniquely
7.8 years ago by epigene ▴ 590
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0
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2.2k
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Comment: C: cancer genomics or genetics basis of disease research?
7.9 years ago by epigene ▴ 590
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0
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2.2k
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Comment: C: cancer genomics or genetics basis of disease research?
7.9 years ago by epigene ▴ 590
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0
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9.5k
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Comment: C: What Tool To Use To Build An Interactive Heatmap?
7.9 years ago by epigene ▴ 590
0
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1
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7.5k
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Comment: C: Annotating Chip Seq: How To Get Enrichment Over Random Background
8.7 years ago by epigene ▴ 590
0
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1
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4.1k
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Comment: C: Random Genomic Regions Of A Given Length Distribution
8.7 years ago by epigene ▴ 590
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0
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2.8k
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Comment: Comment: do you need to reverse complement read 2 in aligning paired end reads?
updated 16 months ago by 43k • written 8.8 years ago by ▴ 590
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1
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14k
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Comment: Comment: what does a high derived allele frequency mean?
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 590
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1
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14k
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Comment: Comment: what does a high derived allele frequency mean?
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 590
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0
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3.9k
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Comment: C: RNA-Seq: does stranded and directional mean the same thing?
9.4 years ago by epigene ▴ 590
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1
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7.9k
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Comment: C: How to extract sequences from multz sequence alignment on UCSC genome browser?
9.5 years ago by epigene ▴ 590
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0
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7.9k
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Comment: Comment: How to extract sequences from multz sequence alignment on UCSC genome browser?
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 590
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2
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3.2k
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Comment: C: Chip-Seq For Mitochondrial Genome
9.6 years ago by epigene ▴ 590
0
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1
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3.1k
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Comment: Comment: how to get promoter coordinates?
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
0
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1
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3.2k
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Comment: C: what do Enredo, Pecan, Ortheus stand for?
10.0 years ago by epigene ▴ 590
1
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0
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6.3k
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Comment: C: Adapter Trimming Length Cutoff And Quality Trimming Quality Cutoff
10.1 years ago by epigene ▴ 590
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