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Posts by oadaily
Comment: C: Bwa Indels
... Eric, is it possible to force ogap to realign only soft-clipped reads (all of them if possible) but nothing else. ...
... Hi all, I am new to biostar so I want start by saying thank you all for sharing your expertise. I recently started testing stampy-1.0.21. I align with bwa-0.5.9-r16 and use output redirection to pipe bwa sam output into stampy to align the bwa output. I use standard options for both tools with -- ...
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