Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : comments
0
votes
0
replies
472
views
Comment: Comment: Should centering and scaling be done on methylation beta values for principal co
3 months ago by Pratik ★ 1.0k
0
votes
0
replies
458
views
Comment: Comment: Is it possible to bulk-download gene expression + methylation data for a specifi
3 months ago by Pratik ★ 1.0k
0
votes
0
replies
7.8k
views
Comment: Comment: How to find CpG island shore?
17 months ago by Pratik ★ 1.0k
0
votes
0
replies
845
views
Comment: Comment: Pros and Cons of DNA Mass Spectrometry versus WES/WGS?
20 months ago by Pratik ★ 1.0k
0
votes
1
reply
6.0k
views
Comment: Comment: What is a count matrix for input into Seurat supposed to look like?
23 months ago by Pratik ★ 1.0k
0
votes
0
replies
36k
views
Comment: Comment: How to embed known cell information into Seurat object? AddMetaData?
2.0 years ago by Pratik ★ 1.0k
0
votes
0
replies
1.7k
views
Comment: Comment: Seurat subset cluster cell annotation
2.2 years ago by Pratik ★ 1.0k
1
vote
1
reply
1.5k
views
Comment: Comment: Forcing Seurat to include certain genes during integration
2.3 years ago by Pratik ★ 1.0k
0
votes
0
replies
6.0k
views
Comment: Comment: What is a count matrix for input into Seurat supposed to look like?
2.4 years ago by Pratik ★ 1.0k
0
votes
1
reply
2.5k
views
Comment: Comment: How to quickly find and filter coexpressed markers with one specific gene of int
2.4 years ago by Pratik ★ 1.0k
1
vote
0
replies
819
views
Comment: Comment: PathFindR: Running Reactome for Mouse
2.4 years ago by Pratik ★ 1.0k
0
votes
0
replies
646
views
Comment: Comment: Finding players and targets of expression-regulating pathways
2.4 years ago by Pratik ★ 1.0k
0
votes
0
replies
2.7k
views
Comment: Comment: How to compare expression levels of specific genes between sample groups after g
2.4 years ago by Pratik ★ 1.0k
0
votes
2
replies
2.7k
views
Comment: Comment: How to compare expression levels of specific genes between sample groups after g
2.4 years ago by Pratik ★ 1.0k
0
votes
1
reply
1.0k
views
Comment: Comment: How to create shiny app for deseq2 object creation
2.5 years ago by Pratik ★ 1.0k
0
votes
0
replies
1.0k
views
Comment: Comment: Chromosome sizes downloading (in bp).
2.6 years ago by Pratik ★ 1.0k
0
votes
0
replies
1.7k
views
Comment: Comment: How to rename the elements in columns(txdb)?
2.6 years ago by Pratik ★ 1.0k
0
votes
0
replies
1.7k
views
Comment: Comment: How to rename the elements from columns(txdb)?
2.6 years ago by Pratik ★ 1.0k
0
votes
0
replies
1.8k
views
Comment: Comment: Good or bad idea to annotate with newer genome build?
2.6 years ago by Pratik ★ 1.0k
1
vote
0
replies
1.8k
views
Comment: Comment: Good or bad idea to annotate with newer genome build?
2.6 years ago by Pratik ★ 1.0k
1
vote
1
reply
1.3k
views
Comment: Comment: Is removing strand information when obtaining intergenic regions from GRanges ne
2.7 years ago by Pratik ★ 1.0k
1
vote
0
replies
7.1k
views
Comment: Comment: How to transform the deg gene list from seurat to a gene list input to clusterPr
2.7 years ago by Pratik ★ 1.0k
0
votes
0
replies
4.3k
views
Comment: Comment: Differential Gene Expression
2.7 years ago by Pratik ★ 1.0k
1
vote
2
replies
4.3k
views
Comment: Comment: Differential Gene Expression
2.7 years ago by Pratik ★ 1.0k
1
vote
1
reply
4.3k
views
Comment: Comment: Differential Gene Expression
2.7 years ago by Pratik ★ 1.0k
0
votes
0
replies
42k
views
Comment: Comment: Get chromosome sizes from fasta file
2.7 years ago by Pratik ★ 1.0k
1
vote
1
reply
3.0k
views
Comment: Comment: Tools for bulk RNA-seq celltype deconvolution
2.7 years ago by Pratik ★ 1.0k
0
votes
1
reply
1.2k
views
Comment: Comment: How to plot/combine biological replicates on a genomic features plot for methyla
2.7 years ago by Pratik ★ 1.0k
0
votes
0
replies
1.1k
views
Comment: Comment: What cut-offs to use for Genomic Features Pie Chart for Methylation Array Data?
2.7 years ago by Pratik ★ 1.0k
0
votes
0
replies
36k
views
Comment: Comment: How to embed known cell information into Seurat object? AddMetaData?
2.7 years ago by Pratik ★ 1.0k
0
votes
1
reply
4.0k
views
Comment: Comment: Free to use bioinformatics servers & large memory
2.8 years ago by Pratik ★ 1.0k
1
vote
1
reply
4.0k
views
Comment: Comment: Free to use bioinformatics servers & large memory
2.8 years ago by Pratik ★ 1.0k
0
votes
1
reply
4.0k
views
Comment: Comment: Free to use bioinformatics servers & large memory
2.8 years ago by Pratik ★ 1.0k
0
votes
1
reply
1.0k
views
Comment: Comment: How to create gene level data from a probe level data?
2.8 years ago by Pratik ★ 1.0k
0
votes
1
reply
1.2k
views
Comment: Comment: How to normalize and transform RNA-seq data of different samples for PCA?
2.8 years ago by Pratik ★ 1.0k
1
vote
0
replies
2.1k
views
Comment: Comment: extracting ensembl gene id or entrez gene id from a gene annotation file for BIN
2.8 years ago by Pratik ★ 1.0k
0
votes
1
reply
2.1k
views
Comment: Comment: extracting ensembl gene id or entrez gene id from a gene annotation file for BIN
2.8 years ago by Pratik ★ 1.0k
1
vote
1
reply
5.6k
views
Comment: Comment: How to create a signature matrix based on a given single cell RNA-seq data
2.9 years ago by Pratik ★ 1.0k
0
votes
0
replies
13k
views
Comment: Comment: How do you generate TMM normalized counts using EdgeR?
2.9 years ago by Pratik ★ 1.0k
0
votes
0
replies
13k
views
Comment: Comment: How do you generate TMM normalized counts using EdgeR?
2.9 years ago by Pratik ★ 1.0k
0
votes
0
replies
1.3k
views
Comment: Comment: How to convert a STK alignment into CLUSTAL?
2.9 years ago by Pratik ★ 1.0k
0
votes
1
reply
1.3k
views
Comment: Comment: How to convert a STK alignment into CLUSTAL?
2.9 years ago by Pratik ★ 1.0k
0
votes
0
replies
989
views
Comment: Comment: bgr files: change chromosome annotation
2.9 years ago by Pratik ★ 1.0k
1
vote
1
reply
1.9k
views
Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
2.9 years ago by Pratik ★ 1.0k
2
votes
1
reply
13k
views
Comment: Comment: Is there a way to download FASTq files from SRR IDs?
2.9 years ago by Pratik ★ 1.0k
0
votes
0
replies
1.9k
views
Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
2.9 years ago by Pratik ★ 1.0k
0
votes
0
replies
1.9k
views
Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
2.9 years ago by Pratik ★ 1.0k
0
votes
2
replies
1.9k
views
Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
2.9 years ago by Pratik ★ 1.0k
0
votes
1
reply
1.9k
views
Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
2.9 years ago by Pratik ★ 1.0k
0
votes
0
replies
1.2k
views
Comment: Comment: Up to date bulk RNA-seq Quality Control tools?
2.9 years ago by Pratik ★ 1.0k
96 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6