User: shilpy

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shilpy10
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6 years, 3 months ago
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6 years, 4 months ago
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Posts by shilpy

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13
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Forum: How Can I Remove My Post From Biostar.
... I was to remove previous posts from this site, how can I do that. Thanks! ...
forum biostar general written 6.3 years ago by shilpy10 • updated 4.4 years ago by Michael Dondrup46k
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Comment: C: Help In Writing A Perl Script To Call Somatic Variants
... Hello guys thanks for your comments, finally I got my perl script working, and it is working fine. Now I am able to compare 2 files and get somatic variants. I came to this forum thinking people will help me, unfortunately I got few tips only and much of discouragement. I want to thank members who c ...
written 6.3 years ago by shilpy10
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Comment: C: Help In Writing A Perl Script To Call Somatic Variants
... my $sift_string; my $sift_string2; open VCF, "./normal_variant_filtered.vcf" or die "Unable to open file: $!"; open VCF1,"./tumor_variant_filtered.vcf" or die "Unable to open file:$!"; my @lines = ; my @lines1= splice @lines,0,27; #print "@lines\n"; print"******************************************* ...
written 6.3 years ago by shilpy10
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Comment: C: Help In Writing A Perl Script To Call Somatic Variants
... Please help me how to go about hash part and comparision. ...
written 6.3 years ago by shilpy10
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Comment: C: Help In Writing A Perl Script To Call Somatic Variants
... It may not be very effective way but still it is used as I am asked to do in my class. ...
written 6.3 years ago by shilpy10
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Answer: A: Help In Writing A Perl Script To Call Somatic Variants
... !/usr/bin/perl use strict; use warnings; my $sift_string; my $sift_string2; open VCF, "./normal_variant_filtered.vcf" or die "Unable to open file: $!"; open VCF1,"./tumor_variant_filtered.vcf" or die "Unable to open file:$!"; my @lines = <VCF>; print "@lines\n"; my @lines2 = <VCF1>; pr ...
written 6.3 years ago by shilpy10 • updated 6.3 years ago by Obi Griffith18k
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6 follow
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Help In Writing A Perl Script To Call Somatic Variants
... The script should take 2 input vcf files(normal & tumor) and a output file.If a specific variant is found at a position in the tumor sample vcf file but there is no corresponding variant in the normal sample vcf the results will be written to the output file. Please help or guide for a clue how ...
perl vcf written 6.3 years ago by shilpy10
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Comment: C: How To Set Minimum Read Depth Of 20 While Using Vcfutils.Pl Varfilter Command To
... Thanks ! I got it now. ...
written 6.3 years ago by shilpy10
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Comment: C: Genbank To Fasta Conversion
... Thanks I got my code working I m supposed to use only bioperl. ...
written 6.3 years ago by shilpy10
2
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How To Set Minimum Read Depth Of 20 While Using Vcfutils.Pl Varfilter Command To Filter Variants.
... How to set minimum read depth of 20 while using vcfutils.pl varFilter command to filter variants. ...
samtools written 6.3 years ago by shilpy10 • updated 6.3 years ago by Gabriel R.2.6k

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