User: far.zi

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far.zi10
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USA
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6 days, 8 hours ago
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2 months ago
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Posts by far.zi

<prev • 11 results • page 1 of 2 • next >
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Comment: C: logCPM error in RStudio.
... Those are "Mirtron" reads. I'll also check the manual again. Thank you :) ...
written 4 weeks ago by far.zi10
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Comment: C: logCPM error in RStudio.
... OMG, I thought I need the norm counts. The total is 478. ...
written 4 weeks ago by far.zi10
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Comment: A: logCPM error in RStudio.
... Yes, I am feeding the normalized values. ...
written 4 weeks ago by far.zi10
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logCPM error in RStudio.
... Hi, I've beed doing RNA-Seq analysis using R. However, when I get the final edgeR_result file, the logCPM values are very high which is not true for the genes I'm studying since they are extremely low expressed. I've checked my count table many times and no mistake there. Can someone help me please ...
software error R rna-seq written 4 weeks ago by far.zi10 • updated 4 weeks ago by ATpoint40k
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Comment: C: Selecting the first 100 nt from sequences
... I don't understand why you are mad at me. I have this question and asked people if they can help me. And so far, from my side, I see only 2 people replied. I don't understand "even look at what people are giving you?". ...
written 8 weeks ago by far.zi10
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Comment: C: Selecting the first 100 nt from sequences
... Thanks for your suggestion. ...
written 8 weeks ago by far.zi10
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Comment: C: Selecting the first 100 nt from sequences
... Thanks for your help. But the file it produced is empty :( ...
written 8 weeks ago by far.zi10
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Selecting the first 100 nt from sequences
... Hi, I have fasta file containing loci of like 500 introns. I don't know how to have just the first 100 bases using awk command lines. I have the following command that I used to pick the last 100 nt of the sequences. I thought it might help: sed -Ee 's/^.*(.{100})$/\1/' file.fasta Thanks, Farid ...
rna-seq written 8 weeks ago by far.zi10 • updated 8 weeks ago by swbarnes28.9k
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Comment: A: Selecting the last 100 nt from sequences
... Thanks everyone. The `sed -Ee 's/^.*(.{100})$/\1/' file.fasta` worked great. Appreciate it. ...
written 9 weeks ago by far.zi10 • updated 8 weeks ago by RamRS30k
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Comment: A: Selecting the last 100 nt from sequences
... Thanks RamRS. I think this command works when I know the length of the introns. But I have different lengths and I want the last 100 bases from each sequence. ...
written 9 weeks ago by far.zi10

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