Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
2.4k
views
Comment: C: How do mappers behave at end of reference sequence?
9.3 years ago by Devon Ryan 105k
0
votes
1
reply
5.7k
views
Comment: C: bowtie --fr/--rf/--ff reporting
9.3 years ago by Devon Ryan 105k
2
votes
1
reply
5.7k
views
Answer: A: bowtie --fr/--rf/--ff reporting
9.3 years ago by Devon Ryan 105k
1
vote
0
replies
5.5k
views
Comment: C: What is the difference between calculating fold-changes from normalized counts v
9.4 years ago by Devon Ryan 105k
2
votes
1
reply
5.5k
views
Answer: A: What is the difference between calculating fold-changes from normalized counts v
9.4 years ago by Devon Ryan 105k
1
vote
0
replies
4.1k
views
Comment: C: How can I increase the number of peaks using macs2 peak caller?
9.4 years ago by Devon Ryan 105k
3
votes
0
replies
7.7k
views
Answer: A: Command line scripts for differential expression analysis with R packages (DESeq
9.4 years ago by Devon Ryan 105k
0
votes
0
replies
4.9k
views
Comment: C: To the Biologists out there: What bioinf tool are you missing?
9.4 years ago by Devon Ryan 105k
0
votes
1
reply
14k
views
Comment: C: All the reads aligned using STAR have low mapping quality (0-3). What is happeni
9.4 years ago by Devon Ryan 105k
0
votes
0
replies
4.9k
views
Comment: C: To the Biologists out there: What bioinf tool are you missing?
9.4 years ago by Devon Ryan 105k
1
vote
1
reply
4.9k
views
Comment: C: To the Biologists out there: What bioinf tool are you missing?
9.4 years ago by Devon Ryan 105k
2
votes
2
replies
4.9k
views
Comment: C: To the Biologists out there: What bioinf tool are you missing?
9.4 years ago by Devon Ryan 105k
0
votes
1
reply
2.6k
views
Comment: C: best alignment method
9.4 years ago by Devon Ryan 105k
3
votes
0
replies
3.1k
views
Answer: A: Problem guessing what fastq from paired-end rna-seq is forward and what is rever
9.4 years ago by Devon Ryan 105k
0
votes
1
reply
2.6k
views
Answer: C: design matrix for complicated experimental design in limma
9.4 years ago by Devon Ryan 105k
0
votes
0
replies
1.6k
views
Comment: C: Snords and MiRs in RNA-Seq data
9.4 years ago by Devon Ryan 105k
1
vote
2
replies
14k
views
Comment: C: All the reads aligned using STAR have low mapping quality (0-3). What is happeni
9.4 years ago by Devon Ryan 105k
2
votes
0
replies
2.6k
views
Comment: C: best alignment method
9.4 years ago by Devon Ryan 105k
1
vote
0
replies
1.5k
views
Answer: A: why multimap is discared from chiA-pet analysis
9.4 years ago by Devon Ryan 105k
1
vote
0
replies
5.5k
views
Comment: C: Outliers detection methods for RNA-Seq data
9.4 years ago by Devon Ryan 105k
1
vote
0
replies
8.3k
views
Comment: C: How can I save the output from samtools and awk as a bam file?
9.4 years ago by Devon Ryan 105k
0
votes
1
reply
5.2k
views
Comment: C: Running BWA on single-end data (i.e. only one fastq file) with "sampe" option
9.4 years ago by Devon Ryan 105k
1
vote
1
reply
2.9k
views
Comment: C: Mapping against an inverted reference chromosome to check for an inversion?
9.4 years ago by Devon Ryan 105k
1
vote
1
reply
2.9k
views
Comment: C: Mapping against an inverted reference chromosome to check for an inversion?
9.4 years ago by Devon Ryan 105k
2
votes
1
reply
2.9k
views
Comment: C: Mapping against an inverted reference chromosome to check for an inversion?
9.4 years ago by Devon Ryan 105k
1
vote
1
reply
5.5k
views
Comment: C: Outliers detection methods for RNA-Seq data
9.4 years ago by Devon Ryan 105k
0
votes
1
reply
5.5k
views
Comment: C: Outliers detection methods for RNA-Seq data
9.4 years ago by Devon Ryan 105k
0
votes
0
replies
4.6k
views
Comment: C: DESeq2: unable to allocate memory error
9.4 years ago by Devon Ryan 105k
3
votes
1
reply
1.8k
views
Comment: C: Deciding for the threshold for scores?
9.4 years ago by Devon Ryan 105k
5
votes
1
reply
8.3k
views
Answer: A: How can I save the output from samtools and awk as a bam file?
9.4 years ago by Devon Ryan 105k
0
votes
0
replies
11k
views
Answer: A: samtools counting unique mapped reads
9.4 years ago by Devon Ryan 105k
1
vote
1
reply
4.6k
views
Comment: C: DESeq2: unable to allocate memory error
9.4 years ago by Devon Ryan 105k
1
vote
0
replies
1.9k
views
Answer: A: Strand Specificity and Identification of Antisense RNA
9.4 years ago by Devon Ryan 105k
3
votes
2
replies
3.6k
views
Answer: A: Taking into account antinsense reads when analyzing stranded Illumina data with
9.4 years ago by Devon Ryan 105k
0
votes
0
replies
1.7k
views
Comment: C: programs on BAM file
9.4 years ago by Devon Ryan 105k
0
votes
1
reply
1.7k
views
Comment: C: programs on BAM file
9.4 years ago by Devon Ryan 105k
0
votes
1
reply
1.7k
views
Answer: A: programs on BAM file
9.4 years ago by Devon Ryan 105k
0
votes
0
replies
6.6k
views
Comment: C: Problems with Pysam and deeptools [Help me, please..]
9.4 years ago by Devon Ryan 105k
1
vote
0
replies
6.6k
views
Comment: C: Problems with Pysam and deeptools [Help me, please..]
9.4 years ago by Devon Ryan 105k
0
votes
0
replies
6.6k
views
Comment: C: Problems with Pysam and deeptools [Help me, please..]
9.4 years ago by Devon Ryan 105k
0
votes
1
reply
2.7k
views
Comment: C: How to obtain peak height values from a bed file?
9.4 years ago by Devon Ryan 105k
1
vote
1
reply
6.6k
views
Answer: A: Problems with Pysam and deeptools [Help me, please..]
9.4 years ago by Devon Ryan 105k
1
vote
1
reply
2.6k
views
Answer: A: Bowtie2 mapping algorithm about multiseed process
9.4 years ago by Devon Ryan 105k
5
votes
2
replies
5.8k
views
Answer: A: Is it valid to call this an "empirical p-value" ?
9.4 years ago by Devon Ryan 105k
1
vote
0
replies
7.9k
views
Comment: C: An approach for gene ontology and up- / down-regulated genes (RNAseq)
9.4 years ago by Devon Ryan 105k
0
votes
1
reply
3.0k
views
Comment: C: MISO: Warning: cannot parse their job IDs from the cluster submission system
9.4 years ago by Devon Ryan 105k
2
votes
1
reply
2.1k
views
Answer: A: strand-specific read countin with featureCounts
9.4 years ago by Devon Ryan 105k
1
vote
1
reply
1.5k
views
Comment: C: Working with bowtie legacy output
9.4 years ago by Devon Ryan 105k
1
vote
0
replies
1.5k
views
Answer: A: Getting a list of genes expressed
9.4 years ago by Devon Ryan 105k
2
votes
1
reply
5.3k
views
Comment: C: using GATK IndelRealigner
9.4 years ago by Devon Ryan 105k
10,053 results • Page 86 of 202
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6