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0
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7.5k
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Comment: C: Fisher's exact test gives p-value 0
9.5 years ago by Devon Ryan 105k
0
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1
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4.3k
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Comment: C: compare gene count profiles between samples
9.5 years ago by Devon Ryan 105k
0
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1
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4.3k
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Comment: C: compare gene count profiles between samples
9.5 years ago by Devon Ryan 105k
3
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0
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7.3k
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Answer: A: HTSeq-count paired-end --stranded=yes gives less counts than --stranded=no
9.5 years ago by Devon Ryan 105k
1
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1
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1.9k
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Comment: C: not getting values for Filter columns with vcf files generated using SAMTOOLS Mp
9.5 years ago by Devon Ryan 105k
1
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0
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18k
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Comment: C: STAR genome index with and/or with out *.gtf annotation
9.5 years ago by Devon Ryan 105k
0
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0
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1.3k
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Comment: C: extraction of locations of polymerase III transcribed genes in human
9.5 years ago by Devon Ryan 105k
0
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1
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3.7k
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Comment: C: How to count the reads that overlap with 3' splice sites or 5' splice sites?
9.5 years ago by Devon Ryan 105k
0
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1
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5.6k
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Comment: C: How do I find input arguments (RGPU, RGLB, etc) for AddOrReplaceReadGroups
9.5 years ago by Devon Ryan 105k
4
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2
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18k
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Answer: A: STAR genome index with and/or with out *.gtf annotation
9.5 years ago by Devon Ryan 105k
2
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1
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11k
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Answer: A: Trim galore terminates with exit signal: '256'
9.5 years ago by Devon Ryan 105k
0
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0
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3.8k
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Comment: C: limma overfitting model due to intercept and yet exclusion of intercept= uninter
9.5 years ago by Devon Ryan 105k
1
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1
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5.6k
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Answer: A: How do I find input arguments (RGPU, RGLB, etc) for AddOrReplaceReadGroups
9.5 years ago by Devon Ryan 105k
1
vote
1
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4.8k
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Comment: C: Cannot build cufflinks 2.2.1 from source (possible problem with samtools 1.3.1)
9.5 years ago by Devon Ryan 105k
0
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0
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3.5k
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Comment: C: Design Matrix for Limma
9.5 years ago by Devon Ryan 105k
1
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0
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1.6k
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Answer: A: genomic and coding DNA sequences of ORFs in human in fasta format
9.5 years ago by Devon Ryan 105k
1
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1
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3.7k
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Comment: C: How to count the reads that overlap with 3' splice sites or 5' splice sites?
9.5 years ago by Devon Ryan 105k
1
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1
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5.4k
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Comment: C: Salmon/Sailfish for repeat element quantification?
9.5 years ago by Devon Ryan 105k
0
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0
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2.8k
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Answer: A: Tools error on local galaxy
9.5 years ago by Devon Ryan 105k
0
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0
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2.8k
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Comment: C: Tools error on local galaxy
9.5 years ago by Devon Ryan 105k
1
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1
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1.7k
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Answer: A: 450k Methylation and Translocation
9.5 years ago by Devon Ryan 105k
0
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0
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3.8k
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Comment: C: Analysis of microarray data: "eset" problem
9.5 years ago by Devon Ryan 105k
3
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0
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2.6k
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Answer: A: Update Biopython in Mac OS
9.5 years ago by Devon Ryan 105k
0
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0
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2.2k
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Comment: C: Is there a way to find out all Ribo-seq datasets for Arabidopsis thaliana in NCB
9.5 years ago by Devon Ryan 105k
1
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0
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5.7k
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Comment: C: HISAT - Stringtie
9.5 years ago by Devon Ryan 105k
1
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1
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5.7k
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Comment: C: HISAT - Stringtie
9.5 years ago by Devon Ryan 105k
0
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0
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2.3k
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Comment: C: Suggestions to measure differential expression of two transcripts
9.5 years ago by Devon Ryan 105k
4
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1
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26k
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Answer: A: Conversion tool from ENST(ensembl) transcript to NM transcript(NCBI)
9.5 years ago by Devon Ryan 105k
0
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0
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4.2k
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Answer: A: Read counts based on genes from samtools, feature count and htseq-count
9.5 years ago by Devon Ryan 105k
6
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1
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4.7k
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Answer: A: Does better results in HTSeq-Count mean that the script was run correctly?
9.5 years ago by Devon Ryan 105k
2
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0
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3.3k
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Comment: C: Help simulating RRBS reads
9.5 years ago by Devon Ryan 105k
2
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1
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2.3k
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Comment: C: Suggestions to measure differential expression of two transcripts
9.5 years ago by Devon Ryan 105k
2
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0
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2.5k
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Comment: C: Aligning RNA-seq data against just a small set of transcripts of interest (and c
9.5 years ago by Devon Ryan 105k
0
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0
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2.4k
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Comment: C: Groseq data read count?
9.5 years ago by Devon Ryan 105k
2
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1
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3.8k
views
Answer: A: GC bias correction deepTools2
9.6 years ago by Devon Ryan 105k
0
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1
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14k
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Comment: C: Calculating number of reads for paired end reads?
9.6 years ago by Devon Ryan 105k
0
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0
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3.2k
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Comment: C: Tophat2 mapping takes a lot of time
9.6 years ago by Devon Ryan 105k
1
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2
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14k
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Comment: C: Calculating number of reads for paired end reads?
9.6 years ago by Devon Ryan 105k
0
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0
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3.2k
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Comment: C: Tophat2 mapping takes a lot of time
9.6 years ago by Devon Ryan 105k
0
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1
reply
3.2k
views
Comment: C: Tophat2 mapping takes a lot of time
9.6 years ago by Devon Ryan 105k
0
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1
reply
3.2k
views
Comment: C: Tophat2 mapping takes a lot of time
9.6 years ago by Devon Ryan 105k
8
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1
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14k
views
Answer: A: Calculating number of reads for paired end reads?
9.6 years ago by Devon Ryan 105k
1
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0
replies
2.7k
views
Comment: C: problem with using CuffMerge in Galaxy
9.6 years ago by Devon Ryan 105k
0
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0
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13k
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Comment: C: How to install a specific version of R package in Bioconductor?
9.6 years ago by Devon Ryan 105k
1
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0
replies
2.6k
views
Comment: C: Bowtie2 code help
9.6 years ago by Devon Ryan 105k
1
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0
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6.4k
views
Comment: C: Bioinformatics analyses hall of shame
9.6 years ago by Devon Ryan 105k
1
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0
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4.3k
views
Answer: A: Help understanding Deseq2 '~group' contrasts
9.6 years ago by Devon Ryan 105k
2
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0
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3.9k
views
Comment: C: issues with the hypergeometric test for gene enrichment analysis
9.6 years ago by Devon Ryan 105k
4
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0
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6.4k
views
Comment: C: Bioinformatics analyses hall of shame
9.6 years ago by Devon Ryan 105k
2
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1
reply
3.9k
views
Comment: C: issues with the hypergeometric test for gene enrichment analysis
9.6 years ago by Devon Ryan 105k
10,053 results • Page 92 of 202
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