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Comment: Comment: How to get ncol = nrow?
17 hours ago by Devon Ryan 103k
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701
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Comment: Comment: ChIP-seq visualization: Is it valid to do a coverage normalization in addition t
28 days ago by Devon Ryan 103k
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349
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Comment: Comment: DESeq2 : parameter of Negative Binomial model in a context of gene expression
4 months ago by Devon Ryan 103k
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679
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Answer: Answer: No differentially expressed genes after multiple testing correction in mice
4 months ago by Devon Ryan 103k
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1.2k
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Answer: Answer: Bioinformatics opportunities in Europe?
5 months ago by Devon Ryan 103k
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644
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Comment: Comment: How Wald test calculates p-values in DESeq2?
11 months ago by Devon Ryan 103k
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12k
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Comment: Comment: Convert fastq.gz to fastq.bgz
12 months ago by Devon Ryan 103k
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441
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Comment: Comment: Why the number of genes decreased after dds (DESeqDataSetFromMatrix)?
12 months ago by Devon Ryan 103k
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1.5k
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Comment: Comment: Come work with me! Bioinformatician - Boston MA
12 months ago by Devon Ryan 103k
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1.5k
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Comment: Comment: Come work with me! Bioinformatician - Boston MA
12 months ago by Devon Ryan 103k
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6
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1.5k
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Job: Come work with me! Bioinformatician - Boston MA
bioinformatician
updated 3 months ago by 40k • written 12 months ago by 103k
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450
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Answer: Answer: Do edger, limma and deseq2 can be used with datasets from UMIs
16 months ago by Devon Ryan 103k
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1
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528
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Comment: Comment: Calculate the ratio of H3K4me3 to H3K4me1 using output of deeptools computeMatri
17 months ago by Devon Ryan 103k
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613
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Answer: Answer: Interpreting output produced by computeMatrix reference-point
17 months ago by Devon Ryan 103k
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1.4k
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Comment: Comment: Pool or not to pool
18 months ago by Devon Ryan 103k
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1
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1.4k
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Comment: Comment: Pool or not to pool
18 months ago by Devon Ryan 103k
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1
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1.4k
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Comment: Comment: Pool or not to pool
18 months ago by Devon Ryan 103k
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1.2k
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Comment: Comment: BAM > featurecount > DEseq2 Nextflow/Snakemake pipeline
18 months ago by Devon Ryan 103k
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2.7k
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Comment: Comment: Why piping a conda command into bash doesn't work ?
18 months ago by Devon Ryan 103k
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2
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2.7k
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Comment: Comment: Why piping a conda command into bash doesn't work ?
18 months ago by Devon Ryan 103k
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2.0k
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Comment: Comment: Extracting Methylation Data
19 months ago by Devon Ryan 103k
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2.1k
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Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
20 months ago by Devon Ryan 103k
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0
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682
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Comment: Comment: bisulfite methylation alignment rate
20 months ago by Devon Ryan 103k
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9.5k
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Comment: Comment: DESeq2 modelling and Wald's test
20 months ago by Devon Ryan 103k
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1
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2.1k
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Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
20 months ago by Devon Ryan 103k
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1
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2.2k
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Comment: Comment: normalization for unsupervised analysis by DESeq2
20 months ago by Devon Ryan 103k
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1
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682
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Comment: Comment: bisulfite methylation alignment rate
20 months ago by Devon Ryan 103k
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3.6k
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Comment: Comment: HIsat2 bam and summary output - multiple output file type
20 months ago by Devon Ryan 103k
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2.2k
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Comment: Comment: normalization for unsupervised analysis by DESeq2
20 months ago by Devon Ryan 103k
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8.4k
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Comment: Comment: featureCounts isoform vs gene summarization
20 months ago by Devon Ryan 103k
2
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0
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660
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Answer: Answer: deeptools plotprofile TSS and TES are very close
20 months ago by Devon Ryan 103k
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0
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1.5k
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Comment: Comment: delete a file
20 months ago by Devon Ryan 103k
2
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0
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643
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Answer: Answer: multiBamSummary for unpaired end read?
22 months ago by Devon Ryan 103k
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1
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1.1k
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Answer: Answer: Log2 Scale Deeptools
22 months ago by Devon Ryan 103k
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0
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1.1k
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Comment: Comment: Log2 Scale Deeptools
22 months ago by Devon Ryan 103k
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1.1k
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Answer: Answer: Errors when ajusting pvalue on R
22 months ago by Devon Ryan 103k
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0
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1.1k
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Answer: Answer: Normalizing BAM Files
22 months ago by Devon Ryan 103k
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0
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1.3k
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Answer: Answer: deeptools reference-point center
23 months ago by Devon Ryan 103k
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1
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1.4k
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Comment: Comment: ? in cram files
23 months ago by Devon Ryan 103k
2
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1
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1.4k
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Answer: Answer: ? in cram files
23 months ago by Devon Ryan 103k
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0
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1.6k
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Comment: Comment: Singularity container for deepTools?
24 months ago by Devon Ryan 103k
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0
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1.6k
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Comment: Comment: Kmergenie module readfq not found
2.0 years ago by Devon Ryan 103k
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1.3k
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Comment: Comment: DESeq2 Not full Rank - Age & Medication
2.1 years ago by Devon Ryan 103k
2
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1
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1.3k
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Comment: Comment: DESeq2 Not full Rank - Age & Medication
2.1 years ago by Devon Ryan 103k
1
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0
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1.1k
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Comment: Comment: Bedfile format deeptools
2.1 years ago by Devon Ryan 103k
1
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2
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1.1k
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Answer: Answer: Bedfile format deeptools
2.1 years ago by Devon Ryan 103k
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1
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727
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Comment: Comment: Methylome Data or DE Analysis
2.2 years ago by Devon Ryan 103k
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0
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1.4k
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Comment: Comment: Inserting Gaps into FASTA files for Alignment to Reference
2.2 years ago by Devon Ryan 103k
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0
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3.9k
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Comment: Comment: GC content in bilsulfite converted library
2.2 years ago by Devon Ryan 103k
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1
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11k
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Comment: Comment: ViennaRNA error: ImportError: No module named _RNA
2.2 years ago by Devon Ryan 103k
10,036 results • Page 1 of 201
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