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Answer: Answer: --normalizeUsing RPGC
3 months ago by Devon Ryan 104k
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1
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966
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Answer: Answer: No differentially expressed genes after multiple testing correction in mice
11 months ago by Devon Ryan 104k
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1.9k
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Answer: Answer: Bioinformatics opportunities in Europe?
12 months ago by Devon Ryan 104k
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616
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Answer: Answer: Do edger, limma and deseq2 can be used with datasets from UMIs
23 months ago by Devon Ryan 104k
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839
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Answer: Answer: Interpreting output produced by computeMatrix reference-point
2.0 years ago by Devon Ryan 104k
2
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0
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821
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Answer: Answer: deeptools plotprofile TSS and TES are very close
2.3 years ago by Devon Ryan 104k
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0
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810
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Answer: Answer: multiBamSummary for unpaired end read?
2.4 years ago by Devon Ryan 104k
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1
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1.4k
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Answer: Answer: Log2 Scale Deeptools
2.4 years ago by Devon Ryan 104k
3
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1
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1.5k
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Answer: Answer: Errors when ajusting pvalue on R
2.4 years ago by Devon Ryan 104k
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1.5k
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Answer: Answer: Normalizing BAM Files
2.4 years ago by Devon Ryan 104k
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1.8k
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Answer: Answer: deeptools reference-point center
2.5 years ago by Devon Ryan 104k
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1
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1.7k
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Answer: Answer: ? in cram files
2.5 years ago by Devon Ryan 104k
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2
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1.3k
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Answer: Answer: Bedfile format deeptools
2.6 years ago by Devon Ryan 104k
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1
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842
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Answer: Answer: Look at Different Locus in the Bam File
2.9 years ago by Devon Ryan 104k
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1
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2.2k
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Answer: Answer: Remove prefix chrom:position before rsIDs
2.9 years ago by Devon Ryan 104k
4
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1
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4.4k
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Answer: Answer: Installing samtools version 1.12
2.9 years ago by Devon Ryan 104k
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602
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Answer: Answer: Are [*.removed.sorted.bai] and [*.metrix.txt] needed for the next step?
2.9 years ago by Devon Ryan 104k
4
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1
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2.7k
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Answer: Answer: deeptools 3.5 Segmentation fault:11
2.9 years ago by Devon Ryan 104k
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2
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2.8k
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Answer: Answer: Deeptools, ComputeMatrix and plotProfile
3.0 years ago by Devon Ryan 104k
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0
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897
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Answer: Answer: calculate area under curve for profile plot (deepTools)
3.0 years ago by Devon Ryan 104k
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0
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1000
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Answer: Answer: Can I control the exposure time as a batch effect?
3.1 years ago by Devon Ryan 104k
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0
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1.4k
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Answer: A: If I want to learn bioinformatics as a computer scientist, would it help to lear
3.1 years ago by Devon Ryan 104k
6
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0
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7.8k
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Answer: A: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
3.1 years ago by Devon Ryan 104k
1
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1
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854
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Answer: A: Calculating fold change...CONFUSION
3.2 years ago by Devon Ryan 104k
34
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5
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56k
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Answer: A: How To Write Data In A Granges Object To A Bed File.
updated 3.2 years ago by 43k • written 10.4 years ago by 104k
2
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3.0k
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Answer: A: What are those black lines in my heatmap?
3.2 years ago by Devon Ryan 104k
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0
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5.7k
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Answer: A: error with vcfutils when building consensus sequence with samtools and bcftools
updated 3.3 years ago by 43k • written 9.2 years ago by 104k
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7.1k
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Answer: A: ATAC-seq +4 -5 shift
3.3 years ago by Devon Ryan 104k
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1.1k
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Answer: C: Counting data with ht seq
3.4 years ago by Devon Ryan 104k
3
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1
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2.0k
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Answer: A: Is it normal to obtain a perfectly dark blue "Per tile sequence quality" plot in
3.4 years ago by Devon Ryan 104k
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0
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2.5k
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Answer: Answer: Are topics such as Metagenomics and Genome Editing a good start for someone new
updated 2.1 years ago by 43k • written 9.3 years ago by 104k
3
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1
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981
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Answer: Answer: Is there a stagewise testing procedure for DESeq2?
3.4 years ago by Devon Ryan 104k
2
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0
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1.3k
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Answer: A: Converting to decimal values
3.4 years ago by Devon Ryan 104k
1
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1
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2.6k
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Answer: A: How to count the number of codons in a frame or order using the equation?
3.4 years ago by Devon Ryan 104k
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0
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2.7k
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Answer: A: DeepTools plotProfile y axis units?
3.5 years ago by Devon Ryan 104k
0
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1
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1.5k
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Answer: A: MultiBamSummary for correlating ChIPseq datasets
3.5 years ago by Devon Ryan 104k
10
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1
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5.4k
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Answer: A: Scaling vs normalization in bamCompare
3.5 years ago by Devon Ryan 104k
5
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2
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37k
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Answer: A: how to convert a long fasta-file into many separate single fasta sequences
updated 3.5 years ago by 43k • written 9.8 years ago by 104k
4
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1
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6.2k
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Answer: C: update salmon with conda
3.5 years ago by Devon Ryan 104k
3
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1
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2.2k
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Answer: A: Comparing input read subtracted ChIP-read profiles using Deeptools2
3.6 years ago by Devon Ryan 104k
1
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1
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1.0k
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Answer: A: Flip the heatmaps of ChIP-seq data to match TSS of +/- strand in deeptools
3.6 years ago by Devon Ryan 104k
0
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1
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936
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Answer: A: Plot a dotted line to the start of the regions in computeMatrix, deepTools
3.6 years ago by Devon Ryan 104k
2
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0
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2.3k
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Answer: A: Why STAR Aligner limits alignments to soft-masked regions (lowercase letters in
3.6 years ago by Devon Ryan 104k
0
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1
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1.0k
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Answer: A: what the mean of Genomic content
3.6 years ago by Devon Ryan 104k
1
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1
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1.5k
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Answer: C: What is "Possible polymerase run-on fragment"?
updated 3.6 years ago by 43k • written 5.9 years ago by 104k
2
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1
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17k
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Answer: A: Benjamini+ Hochberg multiple testing p.adjust R
3.6 years ago by Devon Ryan 104k
2
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1
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2.5k
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Answer: A: Samtools merge BAM files using snakemake
3.7 years ago by Devon Ryan 104k
2
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2
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2.3k
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Answer: A: deepTools NPZ to PCA plot with modifications
3.7 years ago by Devon Ryan 104k
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0
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5.7k
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Answer: C: Help with DeepTools
3.7 years ago by Devon Ryan 104k
5
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1
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1.3k
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Answer: A: Which is the best approach to get DEG across one condition, in a three-factor de
3.7 years ago by Devon Ryan 104k
2,882 results • Page 1 of 58
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