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3
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677
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Answer: Answer: No differentially expressed genes after multiple testing correction in mice
4 months ago by Devon Ryan 103k
5
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0
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1.2k
views
Answer: Answer: Bioinformatics opportunities in Europe?
5 months ago by Devon Ryan 103k
2
votes
1
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450
views
Answer: Answer: Do edger, limma and deseq2 can be used with datasets from UMIs
16 months ago by Devon Ryan 103k
1
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0
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612
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Answer: Answer: Interpreting output produced by computeMatrix reference-point
17 months ago by Devon Ryan 103k
2
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0
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657
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Answer: Answer: deeptools plotprofile TSS and TES are very close
20 months ago by Devon Ryan 103k
2
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0
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640
views
Answer: Answer: multiBamSummary for unpaired end read?
21 months ago by Devon Ryan 103k
0
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1
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1.1k
views
Answer: Answer: Log2 Scale Deeptools
22 months ago by Devon Ryan 103k
3
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1
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1.1k
views
Answer: Answer: Errors when ajusting pvalue on R
22 months ago by Devon Ryan 103k
2
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0
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1.1k
views
Answer: Answer: Normalizing BAM Files
22 months ago by Devon Ryan 103k
1
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0
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1.3k
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Answer: Answer: deeptools reference-point center
22 months ago by Devon Ryan 103k
2
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1
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1.4k
views
Answer: Answer: ? in cram files
23 months ago by Devon Ryan 103k
1
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2
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1.1k
views
Answer: Answer: Bedfile format deeptools
2.1 years ago by Devon Ryan 103k
1
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1
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683
views
Answer: Answer: Look at Different Locus in the Bam File
2.3 years ago by Devon Ryan 103k
1
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1
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2.1k
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Answer: Answer: Remove prefix chrom:position before rsIDs
2.3 years ago by Devon Ryan 103k
4
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1
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3.5k
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Answer: Answer: Installing samtools version 1.12
2.3 years ago by Devon Ryan 103k
0
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0
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523
views
Answer: Answer: Are [*.removed.sorted.bai] and [*.metrix.txt] needed for the next step?
2.4 years ago by Devon Ryan 103k
4
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1
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2.3k
views
Answer: Answer: deeptools 3.5 Segmentation fault:11
2.4 years ago by Devon Ryan 103k
0
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2
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2.4k
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Answer: Answer: Deeptools, ComputeMatrix and plotProfile
2.5 years ago by Devon Ryan 103k
1
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0
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771
views
Answer: Answer: calculate area under curve for profile plot (deepTools)
2.5 years ago by Devon Ryan 103k
1
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0
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822
views
Answer: Answer: Can I control the exposure time as a batch effect?
2.5 years ago by Devon Ryan 103k
1
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0
replies
1.2k
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Answer: A: If I want to learn bioinformatics as a computer scientist, would it help to lear
2.5 years ago by Devon Ryan 103k
6
votes
0
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7.2k
views
Answer: A: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
2.6 years ago by Devon Ryan 103k
1
vote
1
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702
views
Answer: A: Calculating fold change...CONFUSION
2.6 years ago by Devon Ryan 103k
32
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5
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53k
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Answer: A: How To Write Data In A Granges Object To A Bed File.
updated 2.7 years ago by 40k • written 9.8 years ago by 103k
1
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1
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2.4k
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Answer: A: What are those black lines in my heatmap?
2.7 years ago by Devon Ryan 103k
1
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0
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5.5k
views
Answer: A: error with vcfutils when building consensus sequence with samtools and bcftools
updated 2.7 years ago by 40k • written 8.6 years ago by 103k
1
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0
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5.9k
views
Answer: A: ATAC-seq +4 -5 shift
2.7 years ago by Devon Ryan 103k
1
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0
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881
views
Answer: C: Counting data with ht seq
2.8 years ago by Devon Ryan 103k
2
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1
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1.6k
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Answer: A: Is it normal to obtain a perfectly dark blue "Per tile sequence quality" plot in
2.8 years ago by Devon Ryan 103k
1
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0
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2.3k
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Answer: Answer: Are topics such as Metagenomics and Genome Editing a good start for someone new
updated 18 months ago by 40k • written 8.7 years ago by 103k
3
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1
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821
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Answer: Answer: Is there a stagewise testing procedure for DESeq2?
2.8 years ago by Devon Ryan 103k
2
votes
0
replies
1.1k
views
Answer: A: Converting to decimal values
2.8 years ago by Devon Ryan 103k
1
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1
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2.3k
views
Answer: A: How to count the number of codons in a frame or order using the equation?
2.8 years ago by Devon Ryan 103k
0
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0
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2.3k
views
Answer: A: DeepTools plotProfile y axis units?
2.9 years ago by Devon Ryan 103k
0
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1
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1.3k
views
Answer: A: MultiBamSummary for correlating ChIPseq datasets
2.9 years ago by Devon Ryan 103k
8
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1
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4.4k
views
Answer: A: Scaling vs normalization in bamCompare
2.9 years ago by Devon Ryan 103k
5
votes
2
replies
35k
views
Answer: A: how to convert a long fasta-file into many separate single fasta sequences
updated 2.9 years ago by 40k • written 9.2 years ago by 103k
4
votes
1
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4.9k
views
Answer: C: update salmon with conda
3.0 years ago by Devon Ryan 103k
3
votes
1
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1.9k
views
Answer: A: Comparing input read subtracted ChIP-read profiles using Deeptools2
3.0 years ago by Devon Ryan 103k
1
vote
1
reply
922
views
Answer: A: Flip the heatmaps of ChIP-seq data to match TSS of +/- strand in deeptools
3.0 years ago by Devon Ryan 103k
0
votes
1
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799
views
Answer: A: Plot a dotted line to the start of the regions in computeMatrix, deepTools
3.0 years ago by Devon Ryan 103k
2
votes
0
replies
1.9k
views
Answer: A: Why STAR Aligner limits alignments to soft-masked regions (lowercase letters in
3.0 years ago by Devon Ryan 103k
0
votes
1
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848
views
Answer: A: what the mean of Genomic content
3.0 years ago by Devon Ryan 103k
1
vote
1
reply
1.4k
views
Answer: C: What is "Possible polymerase run-on fragment"?
updated 3.1 years ago by 40k • written 5.3 years ago by 103k
2
votes
1
reply
16k
views
Answer: A: Benjamini+ Hochberg multiple testing p.adjust R
3.1 years ago by Devon Ryan 103k
2
votes
1
reply
2.1k
views
Answer: A: Samtools merge BAM files using snakemake
3.1 years ago by Devon Ryan 103k
2
votes
2
replies
1.9k
views
Answer: A: deepTools NPZ to PCA plot with modifications
3.1 years ago by Devon Ryan 103k
0
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0
replies
5.3k
views
Answer: C: Help with DeepTools
3.1 years ago by Devon Ryan 103k
5
votes
1
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1.1k
views
Answer: A: Which is the best approach to get DEG across one condition, in a three-factor de
3.1 years ago by Devon Ryan 103k
2
votes
1
reply
562
views
Answer: A: Python base versus specific environments
3.1 years ago by Devon Ryan 103k
2,881 results • Page 1 of 58
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