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4
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898
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Comment: Comment: Bioinformatics Definitions
2.2 years ago by Devon Ryan 103k
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0
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3.5k
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Comment: Comment: Installing samtools version 1.12
2.3 years ago by Devon Ryan 103k
1
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1
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680
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Answer: Answer: Look at Different Locus in the Bam File
2.3 years ago by Devon Ryan 103k
1
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1
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2.1k
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Answer: Answer: Remove prefix chrom:position before rsIDs
2.3 years ago by Devon Ryan 103k
4
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1
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3.5k
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Answer: Answer: Installing samtools version 1.12
2.3 years ago by Devon Ryan 103k
2
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1
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1.3k
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Comment: Comment: How much weights a million reads
2.3 years ago by Devon Ryan 103k
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0
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3.3k
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Comment: Comment: When is recommended to remove or keep Unpaired "Orphan" reads in downstream anal
2.3 years ago by Devon Ryan 103k
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1
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1.1k
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Comment: Comment: Multi-factor Analysis in DeSEQ2
2.3 years ago by Devon Ryan 103k
0
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0
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520
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Answer: Answer: Are [*.removed.sorted.bai] and [*.metrix.txt] needed for the next step?
2.3 years ago by Devon Ryan 103k
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0
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2.3k
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Comment: Comment: deeptools 3.5 Segmentation fault:11
2.3 years ago by Devon Ryan 103k
4
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1
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2.3k
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Answer: Answer: deeptools 3.5 Segmentation fault:11
2.3 years ago by Devon Ryan 103k
0
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1
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2.3k
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Comment: Comment: deeptools 3.5 Segmentation fault:11
2.3 years ago by Devon Ryan 103k
0
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1
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2.3k
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Comment: Comment: deeptools 3.5 Segmentation fault:11
2.3 years ago by Devon Ryan 103k
0
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0
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616
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Comment: Comment: Performance metrics of aligners and variant callers
2.4 years ago by Devon Ryan 103k
0
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1
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3.7k
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Comment: Comment: Multiqc
2.4 years ago by Devon Ryan 103k
1
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0
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2.4k
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Comment: Comment: Deeptools, ComputeMatrix and plotProfile
2.4 years ago by Devon Ryan 103k
0
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2
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2.4k
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Answer: Answer: Deeptools, ComputeMatrix and plotProfile
2.4 years ago by Devon Ryan 103k
1
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0
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767
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Answer: Answer: calculate area under curve for profile plot (deepTools)
2.4 years ago by Devon Ryan 103k
0
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0
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673
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Comment: Comment: Does GISAID fasta files contain spike protein or whole genome sequence?
2.4 years ago by Devon Ryan 103k
0
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1
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3.5k
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Comment: Comment: DESeq2 multi-factor design
2.4 years ago by Devon Ryan 103k
1
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1
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1.9k
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Comment: Comment: ATAC-Seq: Filter bams for differential analysis or not
2.5 years ago by Devon Ryan 103k
0
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1
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753
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Comment: Comment: Suggestion for modelling transcriptomics analysis
2.5 years ago by Devon Ryan 103k
0
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0
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3.8k
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Comment: Comment: Converting beta value to M value (when beta=1)
2.5 years ago by Devon Ryan 103k
45
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23
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5.9k
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6 follow
Forum: biostar.slack.com: Chat for the biostars community -- [ feel free to join ]
chat slack
updated 7 months ago by 40k • written 5.5 years ago by 103k
1
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0
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819
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Answer: Answer: Can I control the exposure time as a batch effect?
2.5 years ago by Devon Ryan 103k
1
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0
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1.2k
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Answer: A: If I want to learn bioinformatics as a computer scientist, would it help to lear
2.5 years ago by Devon Ryan 103k
0
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1
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800
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Comment: C: Lmfit function, to analyse differential expressions, not coming from arrays
2.5 years ago by Devon Ryan 103k
0
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1
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889
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Comment: C: A layman trying to understand what a FASTA file is
2.5 years ago by Devon Ryan 103k
0
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0
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5.8k
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Comment: C: Remove supplementary alignments from a bam file
2.5 years ago by Devon Ryan 103k
6
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0
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7.2k
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Answer: A: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
2.5 years ago by Devon Ryan 103k
0
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0
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7.2k
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Comment: C: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
2.5 years ago by Devon Ryan 103k
0
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1
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7.2k
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Comment: C: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
2.5 years ago by Devon Ryan 103k
3
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0
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3.4k
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Comment: C: bamCoverage bin size for narrow and broad histone marks
2.6 years ago by Devon Ryan 103k
1
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0
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6.7k
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Comment: C: The meaning of differentially expressed (DE) gene level
2.6 years ago by Devon Ryan 103k
0
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0
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696
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Comment: C: Calculating fold change...CONFUSION
2.6 years ago by Devon Ryan 103k
1
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1
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696
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Answer: A: Calculating fold change...CONFUSION
2.6 years ago by Devon Ryan 103k
2
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0
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53k
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Comment: C: How To Write Data In A Granges Object To A Bed File.
updated 2.6 years ago by 40k • written 9.7 years ago by 103k
32
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5
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53k
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Answer: A: How To Write Data In A Granges Object To A Bed File.
updated 2.6 years ago by 40k • written 9.8 years ago by 103k
0
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0
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2.4k
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Comment: C: What are those black lines in my heatmap?
2.6 years ago by Devon Ryan 103k
1
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1
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2.4k
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Answer: A: What are those black lines in my heatmap?
2.6 years ago by Devon Ryan 103k
0
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0
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3.0k
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Comment: C: BigWig from ensembl assembly to UCSC session
2.7 years ago by Devon Ryan 103k
0
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1
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3.0k
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Comment: C: BigWig from ensembl assembly to UCSC session
2.7 years ago by Devon Ryan 103k
0
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0
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8.8k
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Comment: C: how is obtained the BED score values (the 5th column of the bed files) in BED fi
2.7 years ago by Devon Ryan 103k
1
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0
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5.5k
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Answer: A: error with vcfutils when building consensus sequence with samtools and bcftools
updated 2.7 years ago by 40k • written 8.6 years ago by 103k
2
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1
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1.3k
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Comment: C: hisat2 alignment error
2.7 years ago by Devon Ryan 103k
1
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0
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5.9k
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Answer: A: ATAC-seq +4 -5 shift
2.7 years ago by Devon Ryan 103k
0
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1
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2.0k
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Comment: C: Extracting Methylation Data
2.8 years ago by Devon Ryan 103k
1
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0
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869
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Answer: C: Counting data with ht seq
2.8 years ago by Devon Ryan 103k
2
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1
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1.6k
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Answer: A: Is it normal to obtain a perfectly dark blue "Per tile sequence quality" plot in
2.8 years ago by Devon Ryan 103k
1
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0
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2.3k
views
Answer: Answer: Are topics such as Metagenomics and Genome Editing a good start for someone new
updated 18 months ago by 40k • written 8.7 years ago by 103k
10,035 results • Page 2 of 201
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