User: joaofadista

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joaofadista40
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40
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New User
Location:
Denmark
Last seen:
1 year, 12 months ago
Joined:
4 years, 8 months ago
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j**********@gmail.com

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Posts by joaofadista

<prev • 7 results • page 1 of 1 • next >
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Comment: C: extract columns from file based on header selected from 2nd file
... Thanks George, but it outputs this error message:  cut: option requires an argument -- 'f'  ...
written 2.1 years ago by joaofadista40
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extract columns from file based on header selected from 2nd file
... I have one large text table, tab separated. The first row is a header. I then have a second text file that contains a subset of the headers in the first file. I want to extract all the columns of the first file whose header is contained in the list given in the second file. Here an example of the in ...
id extract columns written 2.1 years ago by joaofadista40 • updated 2.1 years ago by Antonio R. Franco3.4k
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Comment: A: vcf filtering and query
... Thanks for the replies. Yes, all the 1.5k samples are in one file vcf file. I will try to write a script then... I will explain my problem. I have for each of the 500 mothers, 2 siblings one affected and one not affected by a disease trait (they might be full or only half sibs). Since I have genome ...
written 2.1 years ago by joaofadista40
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vcf filtering and query
... Hi, I would like to know how can I handle this query to a vcf file: I have 2 siblings for each 500 mothers (1500 samples in total). They are all genome-wide genotyped and stored in a vcf file. What I want is to create 3 vcf files from the original one: One where the genotypes for each variant in ...
vcf filter query written 2.1 years ago by joaofadista40
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Answer: A: Is There A Rare Variant Burden Test That Corrects For Gene Length?
... Sorry, but your script does not work if you have less probes per gene. Let say, substitute your: n_probes = c(10, 20, 30, 50, 100, 250) by: n_probes = c(2, 5, 10, 20, 50, 100) ...
written 4.7 years ago by joaofadista40
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Answer: A: Is There A Rare Variant Burden Test That Corrects For Gene Length?
... Thanks for the tip. I will test it out! ...
written 4.7 years ago by joaofadista40
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Is There A Rare Variant Burden Test That Corrects For Gene Length?
... Hi, I would like to know if any of the gene rare variant burden tests out there tries to correct for gene length, or number of variants per gene. As far as I know (might be wrong) this doesn´t seem to be implemented in any test. This would lead to always favor significant results for longer genes v ...
gene length written 4.7 years ago by joaofadista40 • updated 4.7 years ago by Istvan Albert ♦♦ 75k

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Popular Question 4.7 years ago, created a question with more than 1,000 views. For Is There A Rare Variant Burden Test That Corrects For Gene Length?
Student 4.7 years ago, asked a question with at least 3 up-votes. For Is There A Rare Variant Burden Test That Corrects For Gene Length?

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