Moderator: joe.cornish826

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joe.cornish8264.4k
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Posts by joe.cornish826

<prev • 650 results • page 1 of 65 • next >
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Comment: C: In YOUR personal opinion, who are the top 5 bioinformatics researchers in NGS in
... 1-5: Me, obviously. ;) ...
written 16 days ago by joe.cornish8264.4k
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Comment: C: Calling Qiime scripts sequencially in Python 2.7 program
... https://docs.python.org/2/library/subprocess.html Subprocess has what you want. Python can be rather clunky for this kind of thing. If you need data from some of these programs you're calling to end up being processed in python, it is better to pull the data into python from the "outside". You ma ...
written 5 weeks ago by joe.cornish8264.4k
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Comment: C: Metagenome Next Generation Sequencing
... It really depends on what you're after and how much money you have to spend, I'd suggest reading some review articles. ...
written 5 weeks ago by joe.cornish8264.4k
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Comment: C: Metal - the commnad you issued could not be processed
... https://en.wikipedia.org/wiki/Heavy_metal_music ...
written 5 weeks ago by joe.cornish8264.4k
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Comment: C: Empty ENSEMBL gene annotations
... They're just that, unannotated. I'd keep them, may represent novel findings. ...
written 5 weeks ago by joe.cornish8264.4k
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Comment: C: Logos building from pwm (help)
... http://meme-suite.org/doc/transfac-format.html The transfac format looks fairly simple, I'd just convert it by hand unless you have a huge number of motifs to process. ...
written 6 weeks ago by joe.cornish8264.4k
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Answer: A: Need suggestions on increasing the computational power for the bioinformatics an
... If you tend to run many small jobs, get another node. If you have a need for single colossal jobs (e.g. Trinity) you need more ram. From experience, 48gb isn't much ram for that many cores (only 2gb/core). It stinks to have idle cores because you run out of RAM first. ...
written 9 weeks ago by joe.cornish8264.4k
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Comment: C: Suggestions on Sharing VERY LARGE files?
... Any way the database can be split up? Without knowing what your tool is for I can only guess, but maybe a given researcher may only be interested in a specific species (e.g. human), or large groups of species (e.g. bacteria). This could reduce the size of the file needed to be downloaded. It may imp ...
written 9 weeks ago by joe.cornish8264.4k
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Comment: C: Ampicillin resistance gene in human RNA-seq
... Can you post the blast hit(s)? I'm guessing you're simply seeing bacteria either present in your samples or introduced via contamination. ...
written 10 weeks ago by joe.cornish8264.4k
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Comment: C: Extract Information from fasta File
... Nope, here's the output of cut: >ENST00000448914.1 gene:ENSG00000228985.1 >ENST00000631435.1 gene:ENSG00000282253.1 >ENST00000632684.1 gene:ENSG00000282431.1 ...
written 11 weeks ago by joe.cornish8264.4k

Latest awards to joe.cornish826

Popular Question 28 days ago, created a question with more than 1,000 views. For R/Bioconductor: Applying Limma Functions To A Matrix.
Popular Question 8 weeks ago, created a question with more than 1,000 views. For R/Bioconductor: Applying Limma Functions To A Matrix.
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: Paper publication without qPCR validation
Scholar 11 weeks ago, created an answer that has been accepted. For A: difference between "predicted coding region" and "Hypothetical Protein
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Genomics is not Special. Computational Biologist are reinventing the wheel for b
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Paper publication without qPCR validation
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Genomics is not Special. Computational Biologist are reinventing the wheel for b
Popular Question 4 months ago, created a question with more than 1,000 views. For R/Bioconductor: Applying Limma Functions To A Matrix.
Commentator 5 months ago, created a comment with at least 3 up-votes. For C: Genomics is not Special. Computational Biologist are reinventing the wheel for b
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Paper publication without qPCR validation
Popular Question 7 months ago, created a question with more than 1,000 views. For R/Bioconductor: Applying Limma Functions To A Matrix.
Appreciated 8 months ago, created a post with more than 5 votes. For C: Studying Bioinformatics - Reasons, motives and career
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Paper publication without qPCR validation
Commentator 8 months ago, created a comment with at least 3 up-votes. For C: Genomics is not Special. Computational Biologist are reinventing the wheel for b
Commentator 8 months ago, created a comment with at least 3 up-votes. For C: Genomics is not Special. Computational Biologist are reinventing the wheel for b
Appreciated 8 months ago, created a post with more than 5 votes. For A: I want to re-open the old debate: python or perl ?
Commentator 8 months ago, created a comment with at least 3 up-votes. For C: Genomics is not Special. Computational Biologist are reinventing the wheel for b
Appreciated 8 months ago, created a post with more than 5 votes. For C: Studying Bioinformatics - Reasons, motives and career
Popular Question 8 months ago, created a question with more than 1,000 views. For R/Bioconductor: Applying Limma Functions To A Matrix.
Popular Question 8 months ago, created a question with more than 1,000 views. For What Exactly Are The Ncbi Time Limits For Jobs Submitted From A Single Ip?
Commentator 8 months ago, created a comment with at least 3 up-votes. For C: Genomics is not Special. Computational Biologist are reinventing the wheel for b
Good Answer 8 months ago, created an answer that was upvoted at least 5 times. For A: I want to re-open the old debate: python or perl ?
Scholar 9 months ago, created an answer that has been accepted. For A: difference between "predicted coding region" and "Hypothetical Protein
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Paper publication without qPCR validation

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