User: a.basitkhan1990

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Posts by a.basitkhan1990

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Multifactor analysis in DESeq2
... Hello! I have a data-set of tumors and I am checking to see if smoking causes a transcriptional difference. We have divided our sample into ever and never smokers. This same set of tumors has 3 transcriptional subtypes: A, B, and C. I want to control for the differential amounts of these tumors wi ...
rna-seq written 12 days ago by a.basitkhan199010
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How to analyze multiple MAF files
... Hello! I have about 80 MAF files each corresponding to an individual tumor. I would like to analyze with maftools and comparing between groups defined by clinical data. How do I go about combining all of these MAF files into their clinicaly relevant subset for cohort comparison in maftools? I ha ...
wes maftools written 6 months ago by a.basitkhan199010

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