User: gabrielpoccia

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Posts by gabrielpoccia

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Can't download some proteins using Entrez
... Oh, you saved my life! If you allow me, one last question. Some of my proteins are encoded by a whole genome CDs. In the GP file it appears as "/coded_by="join(WAAD01021866.1:<231469..231602, etc ". When I download this file (fasta) using the efetch, I get the whole genome splitted in the protein ...
written 5 weeks ago by gabrielpoccia0
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Comment: C: Can't download some proteins using Entrez
... Can you download the GP this way? ...
written 5 weeks ago by gabrielpoccia0
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Comment: C: Can't download some proteins using Entrez
... I noticed later that I could download the fasta using the IPG database, but what I really need is the GP file, because I'll need later the taxa information and the CDs IDs. But I thing this sequences do have some problems, I tried taking by hand some CDs IDs and tried to download the nucleotide Fast ...
written 5 weeks ago by gabrielpoccia0
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Can't download some proteins using Entrez
... I'm trying to download some protein sequences using Entrez through command line. However, altough 'esearch' command finds my proteins (searching by ID), the 'efetch' don't return anything. I've tried both gp and fasta formats. Here are some example IDs: **GCB61038, GCB69151, GCC23899, GCC32047, M ...
ncbi genbank entrez blast written 6 weeks ago by gabrielpoccia0 • updated 6 weeks ago by Pierre Lindenbaum134k
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Blast templates not found in PSI-TM Coffee
... I'm trying to run psicoffee mode on Ubuntu 18.04, but it returns the error: 17633 -- WARNING: Impossible to find BLAST TemplatesCheck that your blast server is properly installed [See documentation][FATAL:T-COFFEE] I have already updated Perl and installed XML::Simple. I didn't try running on loca ...
t-coffee alignment protein blast written 6 months ago by gabrielpoccia0

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