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Comment: Comment: esearch get taxonomy ID from a large list of accession IDs
23 days ago by Bertalan_Takacs ▴ 90
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1.0k
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Comment: Comment: Precision-recall curve to compare metagenome classifiers to a gold standard - Is
8 months ago by Bertalan_Takacs ▴ 90
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0
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416
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I keep running into errors with the metagenomic classifer GOTTCHA. Can anybody offer some suggestions?
gottcha classification metagenomics
8 months ago by Bertalan_Takacs ▴ 90
3
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2
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1.1k
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Subsetting DGEList object for for a list of genes of interest
dgelist transcriptomics subset edgeR
updated 17 months ago by 141k • written 17 months ago by ▴ 90
1
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0
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520
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Comment: Comment: What does the semicolon notation mean in proteomics analysis
17 months ago by Bertalan_Takacs ▴ 90
5
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2
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520
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What does the semicolon notation mean in proteomics analysis
differential expression semicolon proteomics analysis
17 months ago by Bertalan_Takacs ▴ 90
4
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4
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1.0k
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Precision-recall curve to compare metagenome classifiers to a gold standard - Is this even a viable method?
classification recall precision metagenome
8 months ago by Bertalan_Takacs ▴ 90
0
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0
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346
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Microbiome beta-diversity: Bray-Curtis dissimilarity seems to be biased toward more diverse populations
bray-curtis beta-diversity microbiome classification dissimilarity
22 months ago by Bertalan_Takacs ▴ 90
0
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0
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300
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Immediate segmentation error when using STAR on SMART-Seq data
segmentation smart-seq dumped scRNA-seq STAR
23 months ago by Bertalan_Takacs ▴ 90
1
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1
reply
1.8k
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Comment: Comment: barcode in the fastq files
23 months ago by Bertalan_Takacs ▴ 90
2
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1
reply
858
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Galaxy error "FATAL: container creation failed"
cellranger galaxy pipeline containercreation scrna-seq
updated 23 months ago by 141k • written 23 months ago by ▴ 90
2
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1
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1.0k
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Answer: Answer: Microbial community analysis pipelines in metagenomics
2.1 years ago by Bertalan_Takacs ▴ 90
5
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3
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4.0k
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BLAST nr download and build - "nr.gz: invalid compressed data--format violated"
gzip nr BLAST
updated 13 months ago by 43k • written 2.2 years ago by ▴ 90
3
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1
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4.0k
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Answer: Answer: BLAST nr download and build - "nr.gz: invalid compressed data--format violated"
2.1 years ago by Bertalan_Takacs ▴ 90
0
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0
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620
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Comment: Comment: How to threat bacterial genomes made up of multiple scaffolds in in silico metag
2.2 years ago by Bertalan_Takacs ▴ 90
2
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2
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620
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How to treat bacterial genomes made up of multiple scaffolds in in silico metagenome data generation
ncbi generation assembly metagenome insilico
2.2 years ago by Bertalan_Takacs ▴ 90
0
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3
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2.7k
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Can't download files from the ENA (European Nucleotide Archive) site
ENA
updated 13 months ago by 43k • written 3.1 years ago by ▴ 90
1
vote
1
reply
892
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What is the best way for bacterial variant calling?
mutation prokaryote illumina variant calling
updated 2.8 years ago by 100k • written 2.8 years ago by ▴ 90
0
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0
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543
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Generating random bed with interval lenghts following exponential distribution
length bed distribution intervals random
2.9 years ago by Bertalan_Takacs ▴ 90
0
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0
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653
views
A question about analyzing MACS2 outputs
broad-peak dropa drip-seq macs2
3.0 years ago by Bertalan_Takacs ▴ 90
0
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0
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2.7k
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Comment: A: Can't download files from the ENA (European Nucleotide Archive) site
3.1 years ago by Bertalan_Takacs ▴ 90
0
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0
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710
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Reporting Kraken output in Sunbeam
metagenome sunbeam conda kraken2 multiqc
3.4 years ago by Bertalan_Takacs ▴ 90
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