User: Jlw

gravatar for Jlw
Jlw180
Reputation:
180
Status:
Trusted
Location:
USA/Storrs/UConn
Website:
http://bioinformatics....
Twitter:
UConn_Bioinfo
Last seen:
11 months ago
Joined:
9 years, 1 month ago
Email:
j*******@gmail.com

Posts by Jlw

<prev • 13 results • page 1 of 2 • next >
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Job: Graduate Student Position (PhD) in Plant Computational Genomics Lab at University of Connecticut, USA
... The Plant Computational Genomics lab in the Department of Ecology and Evolutionary Biology at the University of Connecticut seeks motivated PhD students to join the lab in the Summer/Fall 2019. Our research focuses on the computational analysis of genomic and transcriptomic data generated by next-ge ...
genome plants phd job genomics written 12 months ago by Jlw180
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Job: Bioinformatics Scientist Position in the Center for Genome Innovation at UConn
... POSITION SUMMARY The University of Connecticut seeks a Bioinformatics Scientist to serve faculty, researchers, and graduate students on the main UConn campus and the UCHC within the Center for Genome Innovation housed in the cross-campus Institute for Systems Genomics (isg.uconn.edu). We ...
R phylogenetics jobs rna-seq chip-seq written 4.3 years ago by Jlw180
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Transcriptome Sequencing With Pacbio
... We are interested in using PacBio (targeted for transcriptome sequencing) in conjunction with HiSeq/MiSeq reads to assemble (de novo) a reference transcriptome for a large non-model eukaryote. I am looking for some information on the best approaches both in terms of library preparation but more imp ...
denovo transcriptome written 5.8 years ago by Jlw180 • updated 5.6 years ago by Biostar ♦♦ 20
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Comment: C: Making A Bioinformatics Application Available In The Amazon Ec2 Cloud
... Thanks! That does look like a good option though there is no budget to pay for hosting (even though this cost is minimal) so it would have to be in an environment where users pay for time/space on the cloud but the application is available for free (my understanding of how marketplace can work). ...
written 6.1 years ago by Jlw180
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Comment: C: Making A Bioinformatics Application Available In The Amazon Ec2 Cloud
... The idea is to host this on the Amazon cloud (not our own system) similar to how you would access other bioinformatics applications, such as an assembler or SNP caller. We are just trying to find the best medium to serve out this application. ...
written 6.1 years ago by Jlw180
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Comment: C: Making A Bioinformatics Application Available In The Amazon Ec2 Cloud
... Ah, it is already hosted on a website with download/installation instructions through an academic group. We are hoping to use this as another option for access ...
written 6.1 years ago by Jlw180
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Making A Bioinformatics Application Available In The Amazon Ec2 Cloud
... I have a user who is interested in having their application (custom c++/python application) hosted in the Amazon cloud and made accessible to the public. Configuration of the environment is sometimes difficult for users so this would make a VM immediately available to users. Use of the AWS Marketp ...
cloud written 6.1 years ago by Jlw180 • updated 4.7 years ago by Giovanni M Dall'Olio26k
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Answer: A: Samtools (Bcftools) Error Regarding Fields For Mpileup
... Found the error in my ways. Missed a very critical -u flag in the mpileup line to produce the uncompressed bcf. ...
written 6.8 years ago by Jlw180
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(Closed) Samtools (Bcftools) Error Regarding Fields For Mpileup
... Been struggling with a new error that has popped up with calling variants with samtools, using mpileup Current command: samtools mpileup -C50 -Q 20 -q 20 -B -I -S -f ../Pila.88.seeds.fasta pila.s1.sort.nodup.bam pila.s2.sort.nodup.bam pila.s5.sort.nodup.bam | bcftools view -bvcg - > pila.var.ra ...
samtools bcftools snp mpileup written 6.9 years ago by Jlw180
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Comment: C: De Novo Transcriptome Assembly Options For Mixed Platforms (454, Sanger, Solexa)
... Wonderful, thanks! Mira is indeed a resource hog. It is sounding like MIRA is the way to go for now! ...
written 7.8 years ago by Jlw180

Latest awards to Jlw

Popular Question 3.6 years ago, created a question with more than 1,000 views. For Bioinformatics Scientist Position in the Center for Genome Innovation at UConn
Popular Question 3.6 years ago, created a question with more than 1,000 views. For Transcriptome Sequencing With Pacbio
Appreciated 5.7 years ago, created a post with more than 5 votes. For Rna-Seq Polymorphism Detection In Non-Model Plant Organism
Good Question 5.7 years ago, asked a question that was upvoted at least 5 times. For Rna-Seq Polymorphism Detection In Non-Model Plant Organism
Popular Question 5.7 years ago, created a question with more than 1,000 views. For Rna-Seq Polymorphism Detection In Non-Model Plant Organism
Popular Question 5.7 years ago, created a question with more than 1,000 views. For Making A Bioinformatics Application Available In The Amazon Ec2 Cloud
Popular Question 5.7 years ago, created a question with more than 1,000 views. For De Novo Transcriptome Assembly Options For Mixed Platforms (454, Sanger, Solexa)
Popular Question 5.7 years ago, created a question with more than 1,000 views. For Samtools (Bcftools) Error Regarding Fields For Mpileup
Student 5.7 years ago, asked a question with at least 3 up-votes. For Rna-Seq Polymorphism Detection In Non-Model Plant Organism
Student 5.7 years ago, asked a question with at least 3 up-votes. For Transcriptome Sequencing With Pacbio

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