User: J.Ashley

gravatar for J.Ashley
J.Ashley10
Reputation:
10
Status:
New User
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Last seen:
6 years, 5 months ago
Joined:
6 years, 6 months ago
Email:
l*************@yahoo.com

about me

Posts by J.Ashley

<prev • 10 results • page 1 of 1 • next >
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Fetching Description And Accession Number From A Genbank Format Dna Sequence File Using Biojava
... Hello everyone I am trying to fetch the accession number and description from a genbank formatted DNA sequence file. However I keep recieving this error A Exception Has Occurred During Parsing. Please submit the details that follow to biojava-l@biojava.org or post a bug report to http://bugzilla ...
biojava java sequence genbank dna written 6.5 years ago by J.Ashley10 • updated 6.4 years ago by Hamish3.1k
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Comment: C: Biojava Fetchgenbank
... i added the *.jar but still recieved the same results ...
written 6.5 years ago by J.Ashley10
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Comment: C: Biojava Fetchgenbank
... yes I am using eclipse ...
written 6.5 years ago by J.Ashley10
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Comment: C: Biojava Fetchgenbank
... this is the error I am receiving Exception in thread "main" java.lang.Error: Unresolved compilation problem: at test4.main(test4.java:28) I am not quite sure since from looking at the other biojava programs the "catch (exceptions) seems to be right ...
written 6.5 years ago by J.Ashley10
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Biojava Fetchgenbank
... Hi everyone Can someone help with this error please. I am trying to translate 6 open reading frames from the fetchgenbank.java program and Translation:SixFrames java program. used in biojava. I am trying to combine the two error but keep receiving the exception error. Here is what I have so far ...
ncbi sequence translation dna written 6.5 years ago by J.Ashley10 • updated 6.4 years ago by Hamish3.1k
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Comment: C: Parsing A Fasta File In Java
... I got ! , just needed to string userId=null ...
written 6.5 years ago by J.Ashley10
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Comment: C: Parsing A Fasta File In Java
... thanks!, I edited the code a little and now I am getting that userId cannot be resolved into a variable ...
written 6.5 years ago by J.Ashley10
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Comment: C: Extracting Multiple Sequences Files From Large Fasta Text Using Java
... Aghhh I see so you use the compile method!. Thank you so much for your help. I will try this out..test it and see what happens. Again thanks, sometimes it just takes an example to get you going!! ...
written 6.5 years ago by J.Ashley10
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Extracting Multiple Sequences Files From Large Fasta Text Using Java
... Hi I really need some help with my second problem . I have a large fasta file that contains over 300 sequences. I need to search each sequence in the fasta file that contains the following zinc fingers consensus sequence of C-x2-C-x15-C-x2-C or in other words... C-(then 2 letters of any type)-C-( ...
fasta java multiple written 6.5 years ago by J.Ashley10 • updated 6.5 years ago by Alex Reynolds29k
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Parsing A Fasta File In Java
... I am writing a java progam and I am stuck. I need to read a fasta file. parse it out by sequence ID number ( ex:by05f64.y1). Also I then need to create a loop to prompt an input line to enter a sequence ID, and if it exist prints out the sequence. Here is the file >by05e12.y1|BF724769 CCGCCGTGC ...
fasta java dna file programming written 6.5 years ago by J.Ashley10 • updated 6.5 years ago by Pierre Lindenbaum123k

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