User: mauricio.morales
mauricio.morales • 0
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Posts by mauricio.morales
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... Hi!
Which substitution model do you recommend for viral genomes (nucleotides) in RAxML?
I will do the following analysis "Rapid Boostrap + ML"
I think that for the first time it is good to use the GTR model, however, I would like to know your opinions.
Thank you ...
written 2 days ago by
mauricio.morales • 0
• updated
1 day ago by
Mensur Dlakic • 6.5k
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... Hi!
What to do with the hypothetical protein in Prokka?
Some program to improve this metric?
Thank you! ...
written 3 days ago by
mauricio.morales • 0
• updated
3 days ago by
Mensur Dlakic • 6.5k
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... Hi!
I want to do an alignment for 743 viral genomes (27-30 kb approximately) in MAFFT.
All genomes are complete and downloaded from NCBI virus.
I want to do the best alignment and have already performed 5 test alignments, but I need your suggestions and experience to get the best possible result.
...
written 6 days ago by
mauricio.morales • 0
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Comment:
A: raxmlGUI spend time
... I understand.
I will review the parameters and follow your recommendations.
Thank for the help!!!
...
written 6 days ago by
mauricio.morales • 0
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... Hello
I'm doing my thesis in genome sequence analysis and I'm relatively new in bioinformatics.
Anyone know how long an "ML + rapid bootstrap" scan with 100 replicates takes?
I have 723 protein sequences in the analysis, but the analysis never end!
I understand that the time depends on the operatin ...
written 7 days ago by
mauricio.morales • 0
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