User: mauricio.morales

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Posts by mauricio.morales

<prev • 7 results • page 1 of 1 • next >
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Likelihood distance matrix ( .mldist) to .csv or .txt
... Hi! How i can convert **mldist file** (likelihood distance from *iqtree* analysis) **to .txt or .csv file**??? Thank! ...
mldist R likelihood iqtree python written 10 weeks ago by mauricio.morales0 • updated 3 days ago by Biostar ♦♦ 20
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Mapping the dN/dS values
... Hi! Which program do you recommend for mapping the dN/dS values per residue in the protein crystal structure? Thank! ...
dn/ds sequence written 3 months ago by mauricio.morales0
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Substitution model for a viral genome in RAxML
... Hi! Which substitution model do you recommend for viral genomes (nucleotides) in RAxML? I will do the following analysis "Rapid Boostrap + ML" I think that for the first time it is good to use the GTR model, however, I would like to know your opinions. Thank you ...
genome sequence raxml written 3 months ago by mauricio.morales0 • updated 3 months ago by Mensur Dlakic8.1k
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Hypothetical protein in Prokka
... Hi! What to do with the hypothetical protein in Prokka? Some program to improve this metric? Thank you! ...
genome assembly prokka written 3 months ago by mauricio.morales0 • updated 3 months ago by Mensur Dlakic8.1k
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Viral Genome Alignment in MAFFT
... Hi! I want to do an alignment for 743 viral genomes (27-30 kb approximately) in MAFFT. All genomes are complete and downloaded from NCBI virus. I want to do the best alignment and have already performed 5 test alignments, but I need your suggestions and experience to get the best possible result. ...
genome alignment sequence written 3 months ago by mauricio.morales0 • updated 9 weeks ago by Biostar ♦♦ 20
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Comment: A: raxmlGUI spend time
... I understand. I will review the parameters and follow your recommendations. Thank for the help!!! ...
written 4 months ago by mauricio.morales0
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raxmlGUI spend time
... Hello I'm doing my thesis in genome sequence analysis and I'm relatively new in bioinformatics. Anyone know how long an "ML + rapid bootstrap" scan with 100 replicates takes? I have 723 protein sequences in the analysis, but the analysis never end! I understand that the time depends on the operatin ...
genome alignment sequence written 4 months ago by mauricio.morales0

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