User: nageshprabhu.k

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Posts by nageshprabhu.k

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Sequence Duplication levels
... Hello all, I have a question regarding duplication levels shown in MultiQC report. The raw data went through HTStream for preprocessing and MultiQC was used to check. In the report I saw that when I ran multiQC on 3 different lanes of the same sample it had about 40% duplication for all three lanes ...
pcr-enrichment rna-seq multiqc duplication written 5 days ago by nageshprabhu.k0 • updated 5 days ago by genomax89k
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Comment: C: Kallisto: Impact of chosen reference transcriptome on the resulting TPMs
... Yes, that is right. One way to do this would be to extract transcript Ids with respect to non haplotypes using a simple grep command on the annotation(GTF) file and then extract information belonging to those Ids from the ref fasta file and save them as a new fasta file. ...
written 9 days ago by nageshprabhu.k0

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