User: huerqiang
huerqiang • 30
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- Location:
- China/Guang zhou/Southern medical university
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Posts by huerqiang
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... That's because the compareClusterResult slot of the compareCluster result will have a column of "ID", and the columns of "group1" and "expGrp"( in the input file). If there is an "ID" column in your input file, there will be a conflict.
> res@compareClusterResult[1:5, 1:5]
Clu ...
written 5 days ago by
huerqiang • 30
2
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... This is because there is an "ID" column in your data. Just change the column name.
df <- read_tsv("deg_compareClust.tsv")
colnames(df)[3] <- "group1"
res <- compareCluster(ENTREZID~group1+expGrp, data = df, fun = "enrichPathway")
dotplot(res)
...
written 5 days ago by
huerqiang • 30
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