User: caitlin.mcandry

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Posts by caitlin.mcandry

<prev • 9 results • page 1 of 1 • next >
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Comment: C: Differences between PCA plots in DESeq and FactoMineR
... I have the same issue on Safari too. Could it be related to my browser security settings? Both browsers give me a warning that the “certificate has an invalid issuer”. ...
written 5 days ago by caitlin.mcandry0
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Comment: C: Differences between PCA plots in DESeq and FactoMineR
... Ah yeah that’s a good point. I do have javascript turned on yeah. ...
written 6 days ago by caitlin.mcandry0
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Comment: C: Differences between PCA plots in DESeq and FactoMineR
... Yes - as well as having no upvote or accept answer buttons, both my desktop and my laptop do not allow adding comments or replies. The “ADD COMMENT/REPLY” text is present, but not in a coloured box. When hovering over the text, the cursor changes as if selecting a button or link, but nothing happens ...
written 6 days ago by caitlin.mcandry0
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Comment: C: Differences between PCA plots in DESeq and FactoMineR
... Thank you! The UK - it’s very strange, the add reply and add comment buttons are only working on my mobile too. ...
written 6 days ago by caitlin.mcandry0
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Comment: C: Differences between PCA plots in DESeq and FactoMineR - SOLVED
... My browser (Chrome) doesn’t seem to display the option to upvote any answers (it does for comments/replies), or the option to accept an answer. I have tried changing browsers and using the mobile site, but to no avail. Have you come across this before? Cheers! ...
written 6 days ago by caitlin.mcandry0
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Comment: C: Differences between PCA plots in DESeq and FactoMineR - SOLVED
... Thank you very much, I didn’t realise that there is a difference in scaling. When I disabled the default scaling on FactoMineR it produced the same plot as the plotPCA: problem solved! ...
written 6 days ago by caitlin.mcandry0
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Comment: C: Differences between PCA plots in DESeq and FactoMineR - SOLVED
... Thanks very much both - you are right, the plotPCA wasn’t scaled but the FactoMineR plot was! Problem solved! ...
written 6 days ago by caitlin.mcandry0
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Comment: C: Differences between PCA plots in DESeq and FactoMineR - SOLVED
... Thanks for the information, I have updated the post accordingly! ...
written 6 days ago by caitlin.mcandry0
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Differences between PCA plots in DESeq and FactoMineR
... Hello! I'm creating PCA plots with a whole transcriptome dataset, which includes 26,828 'genes', to assess similarity between three groups (E, M and L). I'm doing differential expression analysis using DESeq, so I transformed my DESeqDataSet using VST, then used the plotPCA function from this packag ...
R pca deseq factominer written 7 days ago by caitlin.mcandry0

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