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3
votes
1
reply
485
views
Downloading metadata of all insect SRA sequences from NCBI SRA
database NCBI SRA
updated 8 months ago by 8.8k • written 8 months ago by ▴ 50
6
votes
3
replies
1.1k
views
Create 10,000bp windows for a SNP file and assign each SNP to its respective window
genome snp vcf
updated 20 months ago by 36k • written 20 months ago by ▴ 50
0
votes
0
replies
495
views
Gene names/ids on annotated protein files
bash Protein GFF annotation
updated 2.2 years ago by 151k • written 2.3 years ago by ▴ 50
0
votes
13
replies
2.9k
views
Ete3 build - ValueError: Error parsing Phyml result
ete3 ete3toolkit ete phyml
updated 23 months ago by 45k • written 2.5 years ago by ▴ 50
6
votes
3
replies
1.8k
views
How to add column name to each cell using bash?
bash linux awk
updated 2.6 years ago by 151k • written 2.6 years ago by ▴ 50
8
votes
3
replies
1.3k
views
Problem adding file names to fasta headers in multiple directories using awk
fasta awk bash
updated 2.5 years ago by ★ 4.5k • written 2.6 years ago by ▴ 50
4
votes
4
replies
1.4k
views
Retaining parts of the header file in multiple fasta files.
gnu awk fasta
updated 2.0 years ago by 4.7k • written 2.7 years ago by ▴ 50
1
vote
1
reply
2.7k
views
Different estimates of nucleotide diversity (pi) from two pipelines: pixy vs vcftools
vcftools nucleotide diversity pixy
updated 2.7 years ago by • 0 • written 4.4 years ago by ▴ 50
4
votes
4
replies
1.1k
views
Annotation of multiple reference genomes
reference phylogenomics annotation
updated 3.1 years ago by 151k • written 3.1 years ago by ▴ 50
0
votes
0
replies
596
views
High positive values in vcftools --het results
wgs snpfilter vcftools gatk
3.6 years ago by nitinra ▴ 50
1
vote
1
reply
3.3k
views
Interpreting nucleotide diversity
nucleotide diversity π SNP
updated 4.2 years ago by 20 • written 4.2 years ago by ▴ 50
4
votes
4
replies
1.1k
views
How to generate a tab limited genome co-odinate file from a reference - bedtools
genome SNP bedtools
4.4 years ago by nitinra ▴ 50
3
votes
3
replies
1.7k
views
How to setup a mac for genomic analysis
next-gen software installation
updated 4.4 years ago by 151k • written 4.4 years ago by ▴ 50
0
votes
0
replies
1.1k
views
Determining breakpoint size in cnvnator-lumpy pipeline
lumpy cnvnator cnv sv
4.4 years ago by nitinra ▴ 50
0
votes
0
replies
1.3k
views
Pipeline for merging vcf files from lumpy and cnvnator and sv filtering
cnv sv wgs
4.4 years ago by nitinra ▴ 50
2
votes
1
reply
3.8k
views
Error while merging multiple vcf files using Picard MergeVcfs
snp genome picard gatk
updated 23 months ago by 45k • written 4.6 years ago by ▴ 50
2
votes
1
reply
1.2k
views
How to distinguish selection vs population demography from Tajima's D test
SNP Tajima population genetics vcf
updated 4.5 years ago by 35k • written 4.5 years ago by ▴ 50
0
votes
0
replies
1.9k
views
Negative Fst values from VCFtools result
SNP genome vcftools fst
updated 22 months ago by 45k • written 4.6 years ago by ▴ 50
0
votes
4
replies
1.7k
views
Handing scafflold names for plink bed file
bed plink snp genome
updated 2.1 years ago by • 0 • written 4.6 years ago by ▴ 50
0
votes
2
replies
944
views
Bedtools merge messing chromosome start - end points
genome merge bedtools merge bedtools
updated 4.6 years ago by 14k • written 4.6 years ago by ▴ 50
8
votes
2
replies
2.5k
views
merging multiple vcfs by column in Picard
vcf SNP genome picard
updated 4.6 years ago by 166k • written 4.6 years ago by ▴ 50
3
votes
1
reply
1.7k
views
Plotting large file size of bedtools genomecov output
bedtools genomecov genome coverage depth
updated 4.6 years ago by 166k • written 4.6 years ago by ▴ 50
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