User: greenm11

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greenm110
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Posts by greenm11

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Comment: C: Differential Abundance Analysis wih DESeq2 and metabolites as continuous predict
... Hi, Sorry I should have made it more clear: I repeat this process for each timepoint that has its own subset of the data- this code chunk was just to provide an example. In addition, here I'm not necessarily concerned about the genotype of the mice in this analysis, given we already know from the ...
written 5 weeks ago by greenm110
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Comment: C: Differential Abundance Analysis wih DESeq2 and metabolites as continuous predict
... Hi, Thanks for your rapid reply! The independent filtering variable being set to false is the default (I believe, but could be mistaken) and the argument was present in a differential abundance analysis template provided to my lab by a statistician in a enighbouring lab. Should this argument be chan ...
written 5 weeks ago by greenm110
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Differential Abundance Analysis wih DESeq2 and metabolites as continuous predictor variables
... Hi all, I'm currently working with 16S data from an experiment involving two different strains of mice, at 4 different time points between P17 and P84. I'm attempting to analyze the differentially abundant taxa between genotypes at each postnatal age sampled. In addition, I'm hoping to make use ...
differential abundance microbiome deseq2 written 5 weeks ago by greenm110

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