User: projetoic
projetoic • 0
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Posts by projetoic
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...
those are the data
Phe UUU 1483 1.14 Ser UCU 1094 1.47 Tyr UAU 1000 1.12 Cys UGU 434 1.18
UUC 1117 0.86 UCC 773 1.04 UAC 789 0.88 UGC 303 0.82
Leu UUA 1349 1.55 UCA 882 1.19 TER UAA 47 1.27 TER UGA 36 0.97
UUG 1549 1.78 UCG 487 0.66 UAG ...
written 3 days ago by
projetoic • 0
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... What is the best way to calculate as relative frequencies (value / total value) from a list of tables with absolute values?
Phe UUU 1483 1.14 Ser UCU 1094 1.47 Tyr UAU 1000 1.12 Cys UGU 434 1.18
UUC 1117 0.86 UCC 773 1.04 UAC 789 0.88 UGC 303 0.82
Leu UUA 1349 1.5 ...
written 4 days ago by
projetoic • 0
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... valueConversion = {'T': 1, 'U': 1, 'C': 2, 'A': 3, 'G': 4}
def customHash(codon):
P1 = valueConversion[codon[0].upper()]
P2 = valueConversion[codon[1].upper()]
P3 = valueConversion[codon[2].upper()]
return ((P1 - 1)*16) + P2 + ((P3-1)*4) - 1 # Note the c ...
written 7 weeks ago by
projetoic • 0
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... It is:
syntax error at -e line 2, near ">"
syntax error at -e line 3, near ""[$final]" }"
Execution of -e aborted due to compilation errors.
What do these errors mean? I can't see the exit/output...
...
written 7 weeks ago by
projetoic • 0
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... #Script para contar códons
someSequence = 'atguuucccggggtataaggcaaaa'
d = dict()
for idx in range(0, len(someSequence), 3):
codon = someSequence[idx:idx+3].upper()
if codon not in d:
d[codon] = 0
d[codon] += 1
for codon, cnt in d.item ...
written 7 weeks ago by
projetoic • 0
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... Let's consider these values
T/U=1, C=2, A=3, G=4
And that order: enter image description here
The input is a file.fasta that has the following data:
>id
atgatg
I will open and read the file and I will analyze it every three characters First analysis starts with atg ...
Then I ap ...
written 7 weeks ago by
projetoic • 0
• updated
7 weeks ago by
Jorge Amigo ♦ 12k
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... I'm not able to understand what this excerpt means ... Does he say he can modify the genetic code?
As written above, each is a method of the codonw`.CononSeq object,` e.g.
import codonw
cseq = codonw.CodonSeq("ATGAATATGCTCATTGTCGGTAGAGTTGTTGCTAGTGTTGGGGGAAGCGGACTTCAAACG")
cseq.cai()
T ...
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... Which tools to find similarity and identity via terminal or ubuntu, more complete and with better results?
What are the tools to have a quality control of the alignments?
That can run from the command line
...
written 8 weeks ago by
projetoic • 0
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