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User: projetoic

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projetoic • 0
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Posts by projetoic

<prev • 13 results • page 1 of 2 • next >
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Comment: C: Remove specific sequence group in fasta file
... I would like to remove all that start with lcl. The reference CDS. If so, does it work too? ...
written 11 days ago by projetoic • 0
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Remove specific sequence group in fasta file
... I have several files with the sequence of the organism or species and its reference sequence (CDS) and I would like to eliminate the reference sequences from them leaving only the sequence of the organism. But so far the only solution I've found is editors. And you have to select one by one of the ...
genome R sequence gene software error written 11 days ago by projetoic • 0
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Comment: C: How can I count the symbols in a given string / text and, as a result of that co
... ok you can check now ...
written 22 days ago by projetoic • 0
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Comment: C: How do I count a number of ("-") in a reference string and remove it in a secon
... Please! Help me! I need to solve this problem and I am not getting a solution to my problem ...
written 22 days ago by projetoic • 0
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Comment: C: How can I count the symbols in a given string / text and, as a result of that co
... The header is on the same line in my FASTA file. And I turned it into txt because I couldn't read it with biopython. The alignment was done with mafft arquivo.fasta.aln ou arquivo.aln turned into txt Could you give an example Input: lcl | NC_002640.1_cds_NP_073286.1_1> --- AATG-GG ...
written 22 days ago by projetoic • 0
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How can I count the symbols in a given string / text and, as a result of that count, remove the characters
... f = open('Denv4-X-gb_AY947539.txt', 'r') z = f.read() count_inicio = sum(map(lambda x : 1 if '-' in x else 0, z)) count_fim = sum(map(lambda x : 1 if '-' in x else 0, reversed(z))) print(count_inicio, count_fim) Output> 479 479 file contents: lcl|NC_002640 ...
genome gene alignment sequence software error written 22 days ago by projetoic • 0
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Comment: C: How do I count a number of ("-") in a reference string and remove it in a secon
... import itertools as it f = open('Denv4-X-gb_AY947539.txt', 'r') z = f.read() count_inicio = sum(map(lambda x : 1 if '-' in x else 0, z)) count_fim = sum(map(lambda x : 1 if '-' in x else 0, reversed(z))) print(count_inicio, count_fim) I tried this solution in Python, but the ...
written 22 days ago by projetoic • 0 • updated 22 days ago by Jorge Amigo ♦ 12k
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Comment: C: How to count a sequence and cut in the other sequence?
... I have done the changes ...
written 22 days ago by projetoic • 0
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Comment: C: How do I count a number of ("-") in a reference string and remove it in a secon
... I have done the changes ...
written 22 days ago by projetoic • 0
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(Closed) How do I count a number of ("-") in a reference string and remove it in a second string?
... When counting the number of characters at the beginning of a string or the end of a string, the result is 0. What do I do? f = open('Denv4-X-gb_AY947539.txt', 'r') z = f.read() e = sum(1 for _ in it.takewhile(lambda c: c == '-', z)) y = sum(1 for_ in it.takewhile(lambda c: c == ' ...
genome alignment sequence written 22 days ago by projetoic • 0 • updated 22 days ago by Jorge Amigo ♦ 12k

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