User: deepali.kundnani

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Answer: A: problem with bedtools complement: how to extract strand information?
... Taking the complement of both strands separately worked for me. grep -v '+$' **sorted_gff_file** | bedtools complement -i stdin -g **genome_file** | sed 's/$/\t-/' > **complement_file** grep '+$' **sorted_gff_file** | bedtools complement -i stdin -g **genome_file** | sed 's/$/\t+/' >> ** ...
written 27 days ago by deepali.kundnani0

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