User: anton

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anton40
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5 years, 11 months ago
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7 years, 6 months ago
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Posts by anton

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Answer: A: Doing genome assembly using SPAdes with mate-pair library only on public Galaxy
... Please note that in order to use SPAdes 3.1+ for mate-pair only assemblies you need to have the so-called "high quality mate pairs". Right now such mate pairs can only be generated using Nextera mate pair protocol. Everything else would give you suboptimal assemblies. ...
written 5.9 years ago by anton40
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Answer: A: scaffolds and contigs SPADES
... It's perfectly ok that scaffolds coincide with contigs in case of single paired-end library - the assembler may simply resolve almost all short repeats and thus there is nothing to scaffold. ...
written 6.0 years ago by anton40

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