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Posts by inah
... Hi, I have a question about the application of DEXSeq to isoform data (estimated counts). EdgeR and DESeq2 were designed for gene counts, not isoform counts, and they use either a common dispersion parameter for all genes, or a common prior (essentially). EBseq was designed for isoform data and all ...
... Hi, I am trying to run Salmon on bam files generated by STAR. I am new to using Salmon. I know that I cannot run Salmon on bam files obtained by aligning to the genome. But to my knowledge aligning to the genome is somewhat better than aligning to the transcriptome. Therefore, I generated bam files ...
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