User: dnljmrs

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Posts by dnljmrs

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Comment: C: Bowtie2 alignment issues - huge file size for SAM file creation
... I downloaded from the NCBI the genome assemblies folder for this strain, and in that are many different files - so one of those could be the transcriptome rather than the genome. They are (among other text files, all preceded by GCF_000026665.1_ASM266v1_) cds_from_genomic.fna.gz, genomic.fna.gz, gen ...
written 13 days ago by dnljmrs0
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Bowtie2 alignment issues - huge file size for SAM file creation
... Hi all, I'm a microbiology postdoc but new to bioinformatics, so could do with a little help. I recently received the output files (fastq) from an RNAseq experiment we ran. The RNA was library prep'd and sequenced by our in house genomics facility, but I wanted to learn how to do the analysis of it ...
bowtie2 alignment rna-seq written 13 days ago by dnljmrs0

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