User: mailard

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Posts by mailard

<prev • 18 results • page 1 of 2 • next >
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Pipeline for find splice and SAP (RNA - seq)
... Hello! Can you help me to find splice and SAP? I am new in this and can't understand what program I need to use ...
sap pipeline rna-seq splice written 2 days ago by mailard 0
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Comment: C: Count coverage WGS data
... Okey, thanks for your time! ...
written 4 weeks ago by mailard 0
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Comment: C: Count coverage WGS data
... Thanks for your answer! I find "mean coverage", but it looks strange: mean coverageData = 348.3323X ...
written 4 weeks ago by mailard 0
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Comment: C: error: BAM to FASTQ
... I use histat2 Thanks for your help, I decided my problem! ...
written 4 weeks ago by mailard 0
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Count coverage WGS data
... Hello! I aligned my WGS data to the reference genome. And now I want to see whats coverage I have (50X or 60X)? I run Qualimap and have these results: https://drive.google.com/drive/folders/1pGB7F6521dKOHylvAzZZMfWHKsPXS6LM?usp=sharing Can you help me to understand the report? Thanks for your time ...
genome bam qc qualimap written 4 weeks ago by mailard 0
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error: BAM to FASTQ
... Hi! I run samtools bam2fq bx_mapped.bam and my result is [E::sam_parse1] no SQ lines present in the header [bam2fq_mainloop] Failed to read bam record. [bam2fq_mainloop] Error writing to FASTx files.: No such file or directory [M::bam2fq_mainloop] discarded 0 singletons [M::bam2f ...
fastq bam samtools convert written 4 weeks ago by mailard 0 • updated 4 weeks ago by RamRS30k
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Comment: C: Is it normal that Trimmomatic is trimming DNA seq 2 days?
... Its just sleeping, not running. I dont know( Its 59gb and yup, any error ...
written 5 weeks ago by mailard 0
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Comment: C: bowtie2-align died with signal 2 (INT)
... I installed pre-compiled version of bowtie2 Yup? it works ...
written 5 weeks ago by mailard 0
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bowtie2-align died with signal 2 (INT)
... Hi! I run bowtie2 bowtie2 -x human -U /home/user/h_1/tg8089.fastq -S wu_aligned.sam And i have the error bowtie2-align died with signal 2 (INT) How can i fix it? Thanks for your time! ...
bowtie2 bowtie written 5 weeks ago by mailard 0
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Comment: C: Is it normal that Trimmomatic is trimming DNA seq 2 days?
... No, its not running! Do i need restart the command? ...
written 5 weeks ago by mailard 0

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