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questions
32
votes
10
replies
16k
views
8 follow
How to efficiently remove a list of reads from BAM file?
RNA-Seq
BAM
samtools
Sam
updated 21 months ago by
John Marshall
3.0k • written 8.3 years ago by
Tao
▴ 530
9
votes
4
replies
8.1k
views
Genetic Map file format: how to understand the combined_rate column and the genetic_map column ?
genetic map
centimorgan
updated 3.5 years ago by
2649935201
• 0 • written 7.4 years ago by
Tao
▴ 530
0
votes
4
replies
2.3k
views
How to quickly tell the reference allele given chr, pos, A1 and A2 allele?
snp
reference allele
ref allele
4.0 years ago by
Tao
▴ 530
2
votes
4
replies
1.3k
views
Inspect the LD relation between a single pair of SNPs in detail using Plink --ld
plink
--ld
LD
updated 4.4 years ago by
chrchang523
10k • written 4.4 years ago by
Tao
▴ 530
0
votes
0
replies
1.1k
views
How to do Meta-analysis of statistics from T-tests and Wilcoxon rank sum tests?
meta analysis
t test
wilcoxon rank sum
5.0 years ago by
Tao
▴ 530
0
votes
0
replies
1.4k
views
How to define the LD interval where a SNP locates?
LD
genetics
plink
5.4 years ago by
Tao
▴ 530
8
votes
3
replies
2.4k
views
How to get gene full description with Ensembl IDs?
gene
annotation
Ensembl
updated 5.6 years ago by
zx8754
11k • written 7.2 years ago by
Tao
▴ 530
0
votes
1
reply
1.7k
views
How to match alleles for a pair of SNPs using PLINK?
LD
Allele matching
Plink
5.9 years ago by
Tao
▴ 530
4
votes
7
replies
3.8k
views
Does it make sense to perform Genotype Imputation using variants called from WES?
genotype imputation
Whole Exon Sequencing
variants
6.5 years ago by
Tao
▴ 530
1
vote
5
replies
4.5k
views
In GWAS Studies, how to understand "97 SNPs explain 2.7% of BMI"?
GWAS
updated 6.9 years ago by
Philipp Bayer
8.3k • written 6.9 years ago by
Tao
▴ 530
1
vote
1
reply
3.6k
views
Imputation on two genotyping datasets: should I do imputation separately? or merge the two datasets first?
imputation
genotyping
eQTL
SNPs
7.4 years ago by
Tao
▴ 530
1
vote
0
replies
1.7k
views
Can I do eqtl mapping combining RNA-seq and Microarray data?
eqtl
RNA-Seq
microarray
7.7 years ago by
Tao
▴ 530
10
votes
9
replies
13k
views
6 follow
How to remove a list of reads from fastq file?
fastq
shell
bash
script
updated 17 months ago by
Viki
• 0 • written 7.8 years ago by
Tao
▴ 530
4
votes
7
replies
3.8k
views
Should I use reads with good quality but failed-vendor flag?
sam
vendor failed
sam flag
chastity score
updated 7.8 years ago by
ablanchetcohen
★ 1.2k • written 7.8 years ago by
Tao
▴ 530
6
votes
6
replies
4.9k
views
How to choose NCBI viral database?
ncbi
refseq
genome
viral
7.9 years ago by
Tao
▴ 530
6
votes
7
replies
4.3k
views
How to count files/folders on NCBI ftp server?
ftp
ncbi
linux
shell
updated 7.9 years ago by
SES
8.6k • written 7.9 years ago by
Tao
▴ 530
8
votes
12
replies
3.0k
views
Plant viruses sequences are found in human brain Rna-seq sample: how to evaluate it?
RNA-Seq
human-brain
viruses
updated 21 months ago by
Ram
43k • written 8.2 years ago by
Tao
▴ 530
11
votes
13
replies
8.9k
views
Extract data using awk/sed and output to different files
awk
sed
shell
updated 8.0 years ago by
Alex Reynolds
35k • written 8.0 years ago by
Tao
▴ 530
2
votes
6
replies
3.3k
views
How to tell viruses/bacteria found in human brain Rna-seq samples are intrinsic or contamination?
RNA-Seq
virus
bacteria
contamination
human
updated 8.1 years ago by
Mikael Huss
4.8k • written 8.1 years ago by
Tao
▴ 530
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