User: kuragari.ch

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kuragari.ch20
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Spain
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4 years, 8 months ago
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7 years ago
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Posts by kuragari.ch

<prev • 5 results • page 1 of 1 • next >
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blood deconvolution - cellmix
... Dear all,   I want to perform the deconvolution of a set of blood samples (microarray). Hence I tried to use CellMix. Beeing tapas2 my data-set: R> tapas2 ExpressionSet (storageMode: lockedEnvironment) assayData: 11054 features, 112 samples element names: exprs protocolData: none phenoData: ...
cellmix deconvolution microarray written 4.7 years ago by kuragari.ch20 • updated 4.7 years ago by Biostar ♦♦ 20
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ChIP-Seq alignment with random site for duplicated
... Dear all,   I want to align my ChIP-Seq samples but with two strategies: Align the fastq.gz files and remove the reads that match to more than one site Align the fastq.gz files and, for those reads that are duplicated that match more than one site, assign a random site for them. Can someone ...
alignment chip-seq bwa bowtie written 4.9 years ago by kuragari.ch20 • updated 4.9 years ago by Fidel1.9k
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Comment: C: How Can I Use Penncnv With Samples Genotyped With Cytoscan Hd?
... Take into account that the package will generate a file with the SNPs that contains information from the AllelikPeaks, so you will get from 200K to 300K snips instead of the 750K from the origin. ...
written 6.1 years ago by kuragari.ch20
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Answer: A: How Can I Use Penncnv With Samples Genotyped With Cytoscan Hd?
... Hi! I don't know if it could help you, but there is an R package (that warps APT... ) to create files for PennCNV and for MAD. May be it can help you. - The package's wiki:https://bitbucket.org/brge/affy2sv/wiki/Home - The package's wiki for cytoscan: https://bitbucket.org/brge/affy2sv/wiki/Cyto ...
written 6.1 years ago by kuragari.ch20 • updated 5 months ago by RamRS27k
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Genotype, Baf And L2R For Axiom Exome
... I am trying to extract certain information from Axiom and Axiom Exome arrays from Affymetrix. I have done the same for GenomeWildSNP 6 using oligo, crlmm and others though R but those packages does not support Axiom and Axiom Exome technologies (or I have not been able to use them). So actually I'm ...
genotype affymetrix written 7.1 years ago by kuragari.ch20

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