User: herber4

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herber420
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Posts by herber4

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Listing fasta MSAs with certain taxa/header counts
... Hello all, I am working on a phylogenetic analysis with 23 bacterial genomes. I generated the gene clusters with panaroo and am now making gene trees for individual clusters. The issue is that I am working with the single copy orthologues and have a directory full of .aln.fas multiple sequence ...
gene genome next-gen alignment fasta written 6 weeks ago by herber420
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Answer: A: Visualising Roary Results
... you can use a program like FastTree where you input the core_gene.aln file and it outputs the Newick tree file fasttree core_gene.aln > tree.file http://www.microbesonline.org/fasttree/ ...
written 3 months ago by herber420

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Scholar 11 weeks ago, created an answer that has been accepted. For A: Visualising Roary Results

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