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Posts by herber4
... Hello all, I am working on a phylogenetic analysis with 23 bacterial genomes. I generated the gene clusters with panaroo and am now making gene trees for individual clusters. The issue is that I am working with the single copy orthologues and have a directory full of .aln.fas multiple sequence ...
Answer: A: Visualising Roary Results
... you can use a program like FastTree where you input the core_gene.aln file and it outputs the Newick tree file fasttree core_gene.aln > tree.file http://www.microbesonline.org/fasttree/ ...
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