User: herber4
herber4 • 20
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... Hello all,
I am working on a phylogenetic analysis with 23 bacterial genomes.
I generated the gene clusters with panaroo and am now making gene trees for individual clusters.
The issue is that I am working with the single copy orthologues and have a directory full of .aln.fas multiple sequence ...
written 6 weeks ago by
herber4 • 20
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Answer:
A: Visualising Roary Results
... you can use a program like FastTree where you input the core_gene.aln file and it outputs the Newick tree file
fasttree core_gene.aln > tree.file
http://www.microbesonline.org/fasttree/ ...
written 3 months ago by
herber4 • 20
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