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2
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0
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1.1k
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Comment: Comment: Efficient querying of genomic reference databases with gget
8 months ago by pomodoro_sinensis ▴ 80
2
votes
1
reply
374
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How are intron-containing transcripts captured in snRNA-seq?
snRNA-seq
updated 11 months ago by 10k • written 11 months ago by ▴ 80
0
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0
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301
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Adding counts from two barcodes in anndata object
scRNA-seq anndata
12 months ago by pomodoro_sinensis ▴ 80
0
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0
replies
232
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What is a read generation model?
reads
13 months ago by pomodoro_sinensis ▴ 80
6
votes
1
reply
2.8k
views
Gzip output of fasterq-dump
SRA fasterq-dump
updated 14 months ago by 14k • written 14 months ago by ▴ 80
0
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0
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497
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Comment: Comment: GEO scRNA-seq entry with cell type information?
15 months ago by pomodoro_sinensis ▴ 80
0
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2
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497
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GEO scRNA-seq entry with cell type information?
scRNA-seq
15 months ago by pomodoro_sinensis ▴ 80
0
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1
reply
1.0k
views
Does SCVI automatically use highly variable genes?
scRNA-seq SCVI Highly variable genes
updated 15 months ago by • 0 • written 23 months ago by ▴ 80
0
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1
reply
468
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What is each sample?
scRNA-seq
22 months ago by pomodoro_sinensis ▴ 80
0
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1
reply
531
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Comment: C: Where can I find the raw data for this GSE entry?
23 months ago by pomodoro_sinensis ▴ 80
0
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3
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531
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Where can I find the raw data for this GSE entry?
download raw GSE
23 months ago by pomodoro_sinensis ▴ 80
0
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1
reply
1.1k
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Comment: C: How to add "transcript" feature to a gtf file?
24 months ago by pomodoro_sinensis ▴ 80
0
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0
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1.1k
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Comment: C: How to add "transcript" feature to a gtf file?
24 months ago by pomodoro_sinensis ▴ 80
0
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1
reply
1.1k
views
Comment: C: How to add "transcript" feature to a gtf file?
24 months ago by pomodoro_sinensis ▴ 80
8
votes
7
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1.1k
views
How to add "transcript" feature to a gtf file?
gtf
24 months ago by pomodoro_sinensis ▴ 80
1
vote
2
replies
452
views
What gene mouse IDs are these?
gene mouse ID
updated 2.0 years ago by 68k • written 2.0 years ago by ▴ 80
1
vote
7
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1.6k
views
Is anybody experiencing problems downloading from the SRA?
downloads
updated 2.0 years ago by 20 • written 2.2 years ago by ▴ 80
0
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0
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757
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Comment: C: Unable to find this E coli genome
2.0 years ago by pomodoro_sinensis ▴ 80
0
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1
reply
757
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Comment: C: Unable to find this E coli genome
2.0 years ago by pomodoro_sinensis ▴ 80
0
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0
replies
757
views
Comment: C: Unable to find this E coli genome
2.0 years ago by pomodoro_sinensis ▴ 80
0
votes
2
replies
757
views
Comment: C: Unable to find this E coli genome
2.0 years ago by pomodoro_sinensis ▴ 80
0
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6
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757
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Unable to find this E coli genome
E coli genome ensembl bacteria download
updated 2.0 years ago by ★ 22k • written 2.0 years ago by ▴ 80
0
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0
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655
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Comment: C: How to choose the appropriate gtf file?
2.0 years ago by pomodoro_sinensis ▴ 80
1
vote
2
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655
views
How to choose the appropriate gtf file?
gtf genome human
2.0 years ago by pomodoro_sinensis ▴ 80
0
votes
0
replies
464
views
How do you add up the results from two barcodes in an anndata object?
scRNA-seq anndata
2.2 years ago by pomodoro_sinensis ▴ 80
0
votes
0
replies
1.6k
views
Comment: C: Is anybody experiencing problems downloading from the SRA?
2.2 years ago by pomodoro_sinensis ▴ 80
0
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0
replies
1.6k
views
Comment: C: Is anybody experiencing problems downloading from the SRA?
2.2 years ago by pomodoro_sinensis ▴ 80
0
votes
1
reply
760
views
Comment: C: How can I find the position of a sequence in a fastq file
2.2 years ago by pomodoro_sinensis ▴ 80
0
votes
1
reply
760
views
Comment: C: How can I find the position of a sequence in a fastq file
2.2 years ago by pomodoro_sinensis ▴ 80
0
votes
1
reply
760
views
Comment: C: How can I find the position of a sequence in a fastq file
2.2 years ago by pomodoro_sinensis ▴ 80
0
votes
7
replies
760
views
How can I find the position of a sequence in a fastq file
fastq sequence position find
updated 2.2 years ago by 125k • written 2.2 years ago by ▴ 80
0
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0
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1.1k
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Comment: C: Why does this 10x scRNA-seq data set have one read instead of two reads?
2.2 years ago by pomodoro_sinensis ▴ 80
0
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0
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1.1k
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Comment: C: Why does this 10x scRNA-seq data set have one read instead of two reads?
2.2 years ago by pomodoro_sinensis ▴ 80
0
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0
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1.1k
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Comment: C: Why does this 10x scRNA-seq data set have one read instead of two reads?
2.2 years ago by pomodoro_sinensis ▴ 80
0
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2
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1.1k
views
Comment: C: Why does this 10x scRNA-seq data set have one read instead of two reads?
2.2 years ago by pomodoro_sinensis ▴ 80
1
vote
8
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1.1k
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Why does this 10x scRNA-seq data set have one read instead of two reads?
10x scRNA-seq reads SRA
updated 2.2 years ago by 125k • written 2.2 years ago by ▴ 80
0
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1
reply
1.4k
views
Comment: C: Problems with fastq-dump generating a single fastq file
2.2 years ago by pomodoro_sinensis ▴ 80
0
votes
1
reply
1.4k
views
Comment: C: Problems with fastq-dump generating a single fastq file
2.2 years ago by pomodoro_sinensis ▴ 80
0
votes
1
reply
1.4k
views
Comment: C: Problems with fastq-dump generating a single fastq file
2.2 years ago by pomodoro_sinensis ▴ 80
0
votes
1
reply
1.4k
views
Comment: C: Problems with fastq-dump generating a single fastq file
2.2 years ago by pomodoro_sinensis ▴ 80
1
vote
11
replies
1.4k
views
Problems with fastq-dump generating a single fastq file
fastq-dump pair-ended fastq
updated 2.2 years ago by 125k • written 2.2 years ago by ▴ 80
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