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Hello,
you can use kraken-biom [kraken_biom.py] tool to get your Biom file from input kreport
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I agree for the most part. However, Heng Li has argued that the one application that they are essential for is short read variant calling. …
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In my case , there is only one sample :
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This should work if you know your sequences are related and can be globally aligned; otherwise it is safer to compute local alignments (for…
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A haploid assembly is our goal. For purging we used prefix.p_ctg.gfa (assembly graph of primary contigs).
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