User: justinhaselbach

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Posts by justinhaselbach

<prev • 28 results • page 1 of 3 • next >
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Literature Search for Metabolite
... Hello, I wish to use a tool/ web-server (if any ?) to extract all metabolites (small molecules)  discussed in scientific literature for their levels/ regulation in a particular cell in plants. Say- parenchyma, mesophylls, meristem, suspension cells etc. This is part of our 'metabolomics effort' whe ...
semantics query literature kegg pubmed written 4.5 years ago by justinhaselbach250
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Obtaining .Sqn Files For Wgs Submission At Ncbi ?
... Hello there, During a recent BioProject Submission, NCBI Personnel ask the following: "Your submission contains only fasta sequences. We need .sqn files in order to process a WGS submission." What does it indicate and How to obtain the ".sqn" file formats ? Thanks, Justin ...
ncbi ngs file written 5.8 years ago by justinhaselbach250 • updated 5.8 years ago by Chris Miller20k
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Answer: A: Why Chr17 Does Not Have Telomeres?
... Possibly due to this !!!!: Short telomeres on human chromosome 17p (http://www.nature.com/ng/journal/v18/n1/abs/ng0198-76.html); Human chromosomes with shorter telomeres and large heterochromatin regions have a higher frequency of acquired somatic cell aneuploidy. (http://www.ncbi.nlm.nih.gov/pubmed ...
written 5.8 years ago by justinhaselbach250
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Comment: C: Pathway Enrichment & Genes Shared Between The Pathways
... "Reactome" would be a good answer ? ...
written 5.8 years ago by justinhaselbach250
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Answer: A: Go Terms -- Is It Normal To Have Multiple Go Terms Associated With A Specific Ge
... Well adding to the notes of dpryan79 and JC: not just that the 3 major types of GO components- BUT also 'a single gene' can be involved in multiple functions, processes and locations ! For example- Cellulase- could be secreted to extracellular media, present in the periplasm, in the cytosol, in th ...
written 5.8 years ago by justinhaselbach250
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Comment: C: Any One Interested In Plant Phylo-/Geo-Genomics For A Collaborative Work ?
... Hi Zev, Thanks for the query. I have strong 'hypothesis ready' with me: mostly biological aspects of it. Been working on informatics aspects since a couple of months, now. Tough to translate them and back them up with data. Well, by Data Mining I mean loads of Local BLASTS (p/n), GO & PFam Enri ...
written 5.8 years ago by justinhaselbach250
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Any One Interested In Plant Phylo-/Geo-Genomics For A Collaborative Work ?
... Hi there, Looking for a collaborative colleague in Phyto-Phylo/Geo-Genomics - to work alongside for data mining (you + me) and manuscript writing (me) ! Got Ideas and huge scope. Short-to-mid term collaboration. Not spamming. Thus, looking for serious seekers. Thanks in advance. Thanks, Justin ...
phylogeny plant genomics comparative written 5.8 years ago by justinhaselbach250
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Comment: C: How To Search Sequences With Unknown Genome
... Hi there. Seems an interesting problem. Can you tell me what you wish to "achieve" ? What is your input- NGS data sets, a genome or few sequences or ITS ? And then what is your target- to "annotate" your data or anything else ? Please clarify for better suggestions. Thanks, ...
written 5.8 years ago by justinhaselbach250
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Answer: A: Setting E-Value In Blast
... Okay, here we go. Go to the NCBI BLASTp Page; Expand [+] the "Algorithm Parameters (by clicking on the symbol); & in there the 3rd Parameter is Expect/ E- Value: by default NCBI uses 10; so you use whatever value you wish to ! Say: 0.005 ! Thanks, ...
written 5.8 years ago by justinhaselbach250 • updated 5.8 years ago by Neilfws48k
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Comment: C: Setting E-Value In Blast
... In Local BLAST or at NCBI-BLAST [web-based] ? ...
written 5.8 years ago by justinhaselbach250

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Teacher 5.8 years ago, created an answer with at least 3 up-votes. For A: Why Chr17 Does Not Have Telomeres?

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