User: jmath97

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jmath970
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Posts by jmath97

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Answer: A: Freebayes 'bamleftalign' function usage issues (Part of the 'Du Novo' Sequencin
... For any other users that might have this question, I realized my usage was incorrect. The function requires piping the bam input file into the function as opposed to taking the bam file as a standard input. cat duplex.filt.aln.sort.bam | bamleftalign -f ref.fasta > duplex.filt.aln.sort.lefta ...
written 5 weeks ago by jmath970
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Freebayes 'bamleftalign' function usage issues (Part of the 'Du Novo' Sequencing pipeline)
... Hi, I've been trying to use the 'Du Novo' sequencing pipeline to analyze a set of bacterial whole genome sequencing data. This is the paper outlining the method: [Streamlined analysis of duplex sequencing data with Du Novo][1]. At the 9th step, the pipeline suggests using a function from the packag ...
du novo alignment freebayes written 5 weeks ago by jmath970

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Scholar 5 weeks ago, created an answer that has been accepted. For A: Freebayes 'bamleftalign' function usage issues (Part of the 'Du Novo' Sequencin

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