User: martytriggers

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Posts by martytriggers

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Indel realignment: GATK vs. BCFtools
... Hello everyone, I'm currently calling SNPs for multiple samples. I have done the pre-processing e.g. trimmed, mapped to reference (BWA mem), added readgroups, marked duplicates, and merged into BAMs. I'm now up to variant calling and have run bcftools mpileup/call until I realised I may have missed ...
snp alignment sequence written 4 weeks ago by martytriggers0 • updated 4 weeks ago by genomax92k

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