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Comment: Comment: TPM values from TCGA datasets
15 months ago by rodolfo.peacewalker ▴ 390
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2
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Comment: Comment: Converting transcript_count_matrix to TPM values obtained from RNA seq data
17 months ago by rodolfo.peacewalker ▴ 390
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1
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1.4k
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Comment: Comment: Converting transcript_count_matrix to TPM values obtained from RNA seq data
17 months ago by rodolfo.peacewalker ▴ 390
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949
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Comment: Comment: Deseq2 Result
2.5 years ago by rodolfo.peacewalker ▴ 390
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Comment: Comment: RNA-seq z-score normalization
2.5 years ago by rodolfo.peacewalker ▴ 390
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1.9k
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Comment: Comment: What is the best way to filter out the top differentially expressed genes and de
2.5 years ago by rodolfo.peacewalker ▴ 390
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Comment: Comment: Network analysis using distinct centrality measurements
2.6 years ago by rodolfo.peacewalker ▴ 390
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Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
2.6 years ago by rodolfo.peacewalker ▴ 390
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2.7k
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Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
2.6 years ago by rodolfo.peacewalker ▴ 390
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1.9k
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Comment: Comment: Filtering relevant Gene Ontology (GO) results from Gene Set Enrichment Analysis
2.6 years ago by rodolfo.peacewalker ▴ 390
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952
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Comment: Comment: Sum of rows for GSEA analysis
2.6 years ago by rodolfo.peacewalker ▴ 390
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952
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Comment: Comment: Sum of rows for GSEA analysis
2.6 years ago by rodolfo.peacewalker ▴ 390
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2.3k
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Comment: Comment: Combining RNA-seq data from 2 experiments (DESeq2)
2.7 years ago by rodolfo.peacewalker ▴ 390
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993
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Comment: Comment: DESeq2 design question
2.7 years ago by rodolfo.peacewalker ▴ 390
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1.7k
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Comment: Comment: RNA-seq doesn't match qPCR and western blot results
2.7 years ago by rodolfo.peacewalker ▴ 390
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1.7k
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Comment: Comment: RNA-seq doesn't match qPCR and western blot results
2.7 years ago by rodolfo.peacewalker ▴ 390
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935
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Comment: Comment: Pathway Analysis Interpretation
2.8 years ago by rodolfo.peacewalker ▴ 390
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935
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Comment: Comment: Pathway Analysis Interpretation
2.8 years ago by rodolfo.peacewalker ▴ 390
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Comment: Comment: How install library(DESeq2), library(gplots), library(RColorBrewer) in R?
2.8 years ago by rodolfo.peacewalker ▴ 390
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1.1k
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Comment: Comment: GSEA - Strange Results interpretation - Error in DESEQ2 ?
2.8 years ago by rodolfo.peacewalker ▴ 390
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2.2k
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Comment: Comment: Load GSEA software results into R
2.9 years ago by rodolfo.peacewalker ▴ 390
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37k
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Comment: Comment: output TMM normalized counts with edgeR
2.9 years ago by rodolfo.peacewalker ▴ 390
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1
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2.2k
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Comment: Comment: Concatenating gmt files from msigdb
2.9 years ago by rodolfo.peacewalker ▴ 390
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2.2k
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Comment: Comment: Concatenating gmt files from msigdb
2.9 years ago by rodolfo.peacewalker ▴ 390
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2.0k
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Comment: Comment: DESeq2 multiple group comparisons
3.0 years ago by rodolfo.peacewalker ▴ 390
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864
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Comment: Comment: Working with multiple bam files from tumour vs normal samps in VarScan Somatic
3.0 years ago by rodolfo.peacewalker ▴ 390
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1.7k
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Comment: Comment: DESeq2 adjusted p-values of 0 when p-value > 0.05
3.0 years ago by rodolfo.peacewalker ▴ 390
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1.2k
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Comment: Comment: Mapping EntrezId to Ensembl IDs returns NA for pseudogenes and snoRNA
3.0 years ago by rodolfo.peacewalker ▴ 390
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1
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1.7k
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Comment: Answer: How can I create a count matrix?
3.1 years ago by rodolfo.peacewalker ▴ 390
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15k
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Comment: Comment: Scale and Center [normalized] RNA-seq expression counts for PCA ?
3.1 years ago by rodolfo.peacewalker ▴ 390
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15k
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Comment: C: Scale and Center [normalized] RNA-seq expression counts for PCA ?
3.1 years ago by rodolfo.peacewalker ▴ 390
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15k
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Comment: C: Scale and Center [normalized] RNA-seq expression counts for PCA ?
3.1 years ago by rodolfo.peacewalker ▴ 390
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4.8k
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Comment: C: clusterProfiler: visualising groupGO results with individual genes and their fol
3.1 years ago by rodolfo.peacewalker ▴ 390
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15k
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Comment: C: Scale and Center [normalized] RNA-seq expression counts for PCA ?
3.1 years ago by rodolfo.peacewalker ▴ 390
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6.2k
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Comment: C: Adding extra labels (lines and text) in pheatmap R
3.1 years ago by rodolfo.peacewalker ▴ 390
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1
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717
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Comment: C: Extracting ensembl gene id from messy data frames
3.3 years ago by rodolfo.peacewalker ▴ 390
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717
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Comment: C: Extracting ensembl gene id from messy data frames
3.3 years ago by rodolfo.peacewalker ▴ 390
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1
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1.2k
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Comment: C: Looping over list in R
3.5 years ago by rodolfo.peacewalker ▴ 390
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1.3k
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Comment: C: Multiple plots using for loops in R
3.5 years ago by rodolfo.peacewalker ▴ 390
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14k
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Comment: C: Multiple plots outputs using for loop in R
3.5 years ago by rodolfo.peacewalker ▴ 390
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1.2k
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Comment: C: Looping over list in R
3.5 years ago by rodolfo.peacewalker ▴ 390
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1.2k
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Comment: C: Looping over list in R
3.5 years ago by rodolfo.peacewalker ▴ 390
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2.0k
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Comment: C: Looping in R to perform a GSEA analysis
3.5 years ago by rodolfo.peacewalker ▴ 390
43 results • Page 1 of 1
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