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questions
1
vote
2
replies
1.4k
views
TPM values from TCGA datasets
RNAseq
TPM
TCGA
TIMER
15 months ago by
rodolfo.peacewalker
▴ 390
3
votes
2
replies
1.7k
views
BWA-MEM2 and samtools using for loop
BWA-MEM2
bash
samtools
updated 23 months ago by
rpolicastro
13k • written 23 months ago by
rodolfo.peacewalker
▴ 390
1
vote
2
replies
931
views
Network analysis using distinct centrality measurements
measures
analysis
igraph
STRING
centrality
Network
PPI
2.6 years ago by
rodolfo.peacewalker
▴ 390
1
vote
4
replies
959
views
Sum of rows for GSEA analysis
GSEA
leading-edge
R
fGSEA
2.7 years ago by
rodolfo.peacewalker
▴ 390
0
votes
0
replies
610
views
R is saving empty sheets for several KM plots using RTCGA package
RTCGA
R
updated 13 months ago by
Ram
43k • written 2.8 years ago by
rodolfo.peacewalker
▴ 390
1
vote
5
replies
2.2k
views
Concatenating gmt files from msigdb
ssGSEA
RNAseq
Pathway
KEGG
REACTOME
updated 2.9 years ago by
Kevin Blighe
87k • written 2.9 years ago by
rodolfo.peacewalker
▴ 390
0
votes
2
replies
867
views
Working with multiple bam files from tumour vs normal samps in VarScan Somatic
Variants
DNA-seq
Galaxy
VCF
3.0 years ago by
rodolfo.peacewalker
▴ 390
2
votes
4
replies
2.0k
views
Looping in R to perform a GSEA analysis
RNA-Seq
GSEA
loops
R
updated 3.0 years ago by
ATpoint
82k • written 3.5 years ago by
rodolfo.peacewalker
▴ 390
2
votes
3
replies
6.2k
views
Adding extra labels (lines and text) in pheatmap R
RNA-Seq
R
pheatmap
code
updated 3.1 years ago by
fracarb8
★ 1.6k • written 3.1 years ago by
rodolfo.peacewalker
▴ 390
2
votes
5
replies
723
views
Extracting ensembl gene id from messy data frames
R
RNA-Seq
ChIP-Seq
3.3 years ago by
rodolfo.peacewalker
▴ 390
1
vote
2
replies
1.3k
views
Multiple plots using for loops in R
RNA-Seq
R
ggplot
loop
updated 3.5 years ago by
karl.stamm
4.1k • written 3.5 years ago by
rodolfo.peacewalker
▴ 390
7
votes
6
replies
1.2k
views
Looping over list in R
RNA-Seq
Loop
List
R
updated 22 months ago by
Minh-Anh
▴ 10 • written 3.5 years ago by
rodolfo.peacewalker
▴ 390
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