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1
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2
replies
1.4k
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TPM values from TCGA datasets
RNAseq TPM TCGA TIMER
15 months ago by rodolfo.peacewalker ▴ 390
3
votes
2
replies
1.7k
views
BWA-MEM2 and samtools using for loop
BWA-MEM2 bash samtools
updated 23 months ago by 13k • written 23 months ago by ▴ 390
1
vote
2
replies
929
views
Network analysis using distinct centrality measurements
measures analysis igraph STRING centrality Network PPI
2.6 years ago by rodolfo.peacewalker ▴ 390
1
vote
4
replies
952
views
Sum of rows for GSEA analysis
GSEA leading-edge R fGSEA
2.6 years ago by rodolfo.peacewalker ▴ 390
0
votes
0
replies
608
views
R is saving empty sheets for several KM plots using RTCGA package
RTCGA R
updated 13 months ago by 43k • written 2.8 years ago by ▴ 390
1
vote
5
replies
2.2k
views
Concatenating gmt files from msigdb
ssGSEA RNAseq Pathway KEGG REACTOME
updated 2.9 years ago by 87k • written 2.9 years ago by ▴ 390
0
votes
2
replies
865
views
Working with multiple bam files from tumour vs normal samps in VarScan Somatic
Variants DNA-seq Galaxy VCF
3.0 years ago by rodolfo.peacewalker ▴ 390
2
votes
4
replies
2.0k
views
Looping in R to perform a GSEA analysis
RNA-Seq GSEA loops R
updated 3.0 years ago by 81k • written 3.5 years ago by ▴ 390
2
votes
3
replies
6.2k
views
Adding extra labels (lines and text) in pheatmap R
RNA-Seq R pheatmap code
updated 3.1 years ago by ★ 1.6k • written 3.1 years ago by ▴ 390
2
votes
5
replies
719
views
Extracting ensembl gene id from messy data frames
R RNA-Seq ChIP-Seq
3.3 years ago by rodolfo.peacewalker ▴ 390
1
vote
2
replies
1.3k
views
Multiple plots using for loops in R
RNA-Seq R ggplot loop
updated 3.5 years ago by 4.1k • written 3.5 years ago by ▴ 390
7
votes
6
replies
1.2k
views
Looping over list in R
RNA-Seq Loop List R
updated 22 months ago by ▴ 10 • written 3.5 years ago by ▴ 390
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