User: mikewhity

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Posts by mikewhity

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Confusion Related To The Experiment R-Th Meta Analysis For Identifying Differential Gene Expression
... I was reading this paper where they say they run r-th meta analysis method to find significant genes They have 7 drugs that they apply on 27 cancer cells. They mention that they got the gene expression data for 27 cells from array express. When I look at their algorithm for r-th meta analysis somet ...
pathway gene-expression statistics written 7.7 years ago by mikewhity0 • updated 7.7 years ago by Istvan Albert ♦♦ 86k
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Comment: C: Deal With High Dimensions And Low Number Of Examples Gene Expression Data
... @Sean Davis. Currently, I don't have any local collaborators. I wanted to know since I have very few samples, around 18 cells. Will that be enough to get significant results. I wanted to know if there are any other references where using such small samples anything significant has been done. Can you ...
written 7.7 years ago by mikewhity0
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Comment: C: Deal With High Dimensions And Low Number Of Examples Gene Expression Data
... I have tried the drug response evaluation. Based upon whether the drug kills the cells or not. I have separated them into two classes. The cells which are killed by the drug and cells which arent't. Then using hypothesis test like ttest, kruskal wallis test, I selected those genes which could be sep ...
written 7.7 years ago by mikewhity0
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Deal With High Dimensions And Low Number Of Examples Gene Expression Data
... I have this general issue of high dimensionality and low number of examples gene expression data. Actually, I have some drug responses for some cancer cells and gene expression for those cells before the application of drugs. I want to relate the response to the gene expression, I mean explain the d ...
pathway gene-expression written 7.7 years ago by mikewhity0 • updated 7.7 years ago by Sean Davis26k

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