User: simone.castellana

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Posts by simone.castellana

<prev • 3 results • page 1 of 1 • next >
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10 follow
4
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How to open HUGE excel files with genomic info
... What is the best way to open an excel file containing info on over 6 milion SNPS? Each rows is a SNP, wich relative p-values and other info. I'd like to split the file in sveral different files. Is there a way to do it? Thank you ...
R sequencing snp gwas written 5 weeks ago by simone.castellana10 • updated 5 weeks ago by Mensur Dlakic8.4k
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SNPEff output meaning
... Hi everyone, I wonder if anyone can help understand this SNPEff output: chr pos strain gene_name type effect_impact ref alt codon_change amino_acid_change 1 20136579 6911 RAP2.12 frameshift_variant+stop_lost HIGH TG T tga/ p.Ter357fs/c.1070delG What I'd like to understand is what the 'am ...
snpeff snp written 8 weeks ago by simone.castellana10 • updated 8 weeks ago by evolozzy40
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Problem with BiomaRt::useMart function Landscape Genomics
... Hello everyone, the problem I would like to solve is not easy to explain but I will try to explain it as best I can. I'm workin with the R.SamBada package for Landscape Genomics analyis, and I'm running into a problem. When I use the 'plotResultInteractive' function, which is used to interactively ...
ensembl biomart landcape genomics usamart plant written 9 weeks ago by simone.castellana10 • updated 9 weeks ago by Emily_Ensembl21k

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