User: kristenbeck527

Reputation:
10
Status:
New User
Location:
United States
Last seen:
2 years, 2 months ago
Joined:
6 years, 6 months ago
Email:
k*************@gmail.com

about me

Posts by kristenbeck527

<prev • 4 results • page 1 of 1 • next >
1
vote
1
answer
893
views
1
answer
Can/should Bracken be used with metatranscriptome data?
... Does anyone have experience running Bracken with metatranscriptome data? It seems appealing to be able to recover some of the reads assigned at a higher taxonomic level, but I don't know if there are huge limitations to why this shouldn't be applied with metatranscriptome data that I'm not aware of ...
kraken bracken metagenome metatranscriptome written 2.2 years ago by kristenbeck52710 • updated 2.2 years ago by h.mon28k
0
votes
0
answers
997
views
0
answers
customProDB: issues getting non-model organism dbsnp
... I'm trying to use PrepareAnnotationEnsembl() function in customProDB. Based on Ensembl's site the current dbSNP version for Macaca mulatta is snp131. However, if I try to enter that into the function I get an error. ensembl = useMart(biomart="ensembl") ensembl = useMart("ENSEMBL_MART_ENSEMBL", dat ...
ensembl var customprodb snp written 4.4 years ago by kristenbeck52710
0
votes
4
answers
4.5k
views
4
answers
Comment: C: Find Tfbs Associated With A List Of Genes
... Follow up: I found that TFBS is only available for some species. Human yes. Cow no. ...
written 6.5 years ago by kristenbeck52710
1
vote
4
answers
4.5k
views
4
answers
Answer: A: Find Tfbs Associated With A List Of Genes
... DAVID used to have a UCSC TFBS option and it appears that now they don't. I'm running into the same issue trying to look up enriched terms for RNA-Seq data, but I was previously able to look up transcripts enriched for transcription factor binding sites. Does anyone knows if that option is only avai ...
written 6.5 years ago by kristenbeck52710

Latest awards to kristenbeck527

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 977 users visited in the last hour