User: crl111222

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crl11122210
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Posts by crl111222

<prev • 6 results • page 1 of 1 • next >
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Is OMA suitable for prediction of GO function in metagenomic datasets?
... Greetings, Recently I have been trying OMA to predict GO functions. I was wondering if using OMA is suitable for metagenomic datasets for the same purpose of prediction GO function similar to how EggNOG or Interpro can be used. ...
oma go_label written 11 weeks ago by crl11122210 • updated 14 days ago by clement.train30
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Comment: C: Predicting Gene Ontology function in OMA for large datasets
... Sorry again. I was wondering if there is something not working on the website. Whenever I upload compressed files the status will be error, even with small compressed files. "Your dataset is currently being prepared. Its status is "error". Depending on the size of the uploaded dataset, this may take ...
written 3 months ago by crl11122210
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Comment: C: Predicting Gene Ontology function in OMA for large datasets
... Hi again doctor Altenhoff. I have been trying to upload gzip files of around 28 MB in size however I keep geeting an error that the file is too big (413 Request Entity too large) ...
written 3 months ago by crl11122210
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Comment: C: Predicting Gene Ontology function in OMA for large datasets
... Yes, hi Lieven, thanks for your answer. I am aware of Interproscan. Currently running my sequences there too. And yes... sadly you are right, it is taking some time ...
written 3 months ago by crl11122210
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Comment: C: Predicting Gene Ontology function in OMA for large datasets
... Thanks Adrian for you answer. I would like to ask something else. Is there any way to use the standalone version for this task? I believe that the standalone version, for gene ontology propagation, needs to download some annotated genomes. I have found that if I do this the results will not be as go ...
written 3 months ago by crl11122210
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Predicting Gene Ontology function in OMA for large datasets
... Hello, So the thing is I need to predict the Gene ontology for a dataset of sequences, aproximately one and a half millon sequences. This size is too big for the https://omabrowser.org/oma/functions/. Which would be the best way to use OMA for such a dataset? ...
gene_onthology oma omabrowser written 3 months ago by crl11122210 • updated 3 months ago by adrian.altenhoff900

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